RchiOBHm_Chr1g0324721
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029520
Physical Location & Seq
Reverse (-)
12523850 .. 12526584
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55454

Sequence Viewer

Length: 759 bp
ATGAAGTTTCAACCTGTGATGAAGATGAGACGGTTTGTGATGTGTTTCCACAGCTATGTGATCAGCCAGAAGAAAATCTGGATTCACTCTTACGTCCACCTCAGCCACAAGATCACCGTACTGCAGTCACCAATATACACAAAGCTGGGAAATGATCCACATCTGCTTCAGCCACAGGATTACCAGCCCTCAATATTGCAGTCACCAATATACACAAAGTTGGGAAATGTTTCAGATGCCAATCTCTATTTTGGTGAATGCAATAATTGGCAATCTGCATTTAAGAAAAAAGTTTCAACCAATGAAGTTGACATACCAGTTAGACATATCTTGTCTAATTTTGAAAATCAAGCTACAGACTCTAGGATTCTAAAGGTGCATCATCCTCAATCCAAAGAAAATCTGGAACCAGCGGTTTATTCATTCCAGCCACAAGATTCTACTGTGCAGTCAATGATGTACACAATATATGGAGATGCTTTACATAATATTGAATGCAATGATTTGCAATCTTCGCTTGCAAACTATGACTTTTCTGTCACAAAGTTGTTGAATACAAGCACTGCTGACCAGGATTATTACTCTTCTGATCAAACAACACAGACTCCTTCCATAGACTCCAACCTGCCAACGTCACTGAGAAGGGTCTACCATGGCGATAGTGGAGTAAGCAGGTATGATACAAACACTGAAGTAGCCCATGGAAGTGTACAATATTTGTCTGCATTGGCTATTGGAAATACCCTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

252

Amino Acids

28.68

Weight (kDa)

6.58

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029520)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0324721 RchiOBHm_Chr1g0361621

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 536
Acc36I ACCTGC 2 cut(s) 633, 663
AccI GTMKAC 1 cut(s) 648
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 152, 711
AfaI GTAC 3 cut(s) 120, 461, 711
AgsI TTSAA 5 cut(s) 11, 297, 344, 494, 553
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 4 cut(s) 54, 145, 353, 756
AluI AGCT 4 cut(s) 54, 145, 353, 756
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 229
AsuHPI GGTGA 4 cut(s) 106, 120, 195, 266
BarI GAAGNNNNNNTAC 2 cut(s) 297, 329
BbvCI CCTCAGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 572
BclI TGATCA 2 cut(s) 60, 589
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 2 cut(s) 122, 354
BfuAI ACCTGC 2 cut(s) 633, 663
Bme1390I CCNGG 1 cut(s) 572
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 572
BmsI GCATC 3 cut(s) 226, 388, 466
Bpu10I CCTNAGC 1 cut(s) 101
BsaBI GATNNNNATC 2 cut(s) 159, 240
BsaJI CCNNGG 2 cut(s) 652, 700
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 505
Bse8I GATNNNNATC 2 cut(s) 159, 240
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 2 cut(s) 652, 700
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 2 cut(s) 159, 240
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 2 cut(s) 115, 629
BseNI ACTGG 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
BsmI GAATGC 2 cut(s) 263, 500
Bsp1407I TGTACA 2 cut(s) 459, 709
Bsp143I GATC 4 cut(s) 60, 111, 154, 589
Bsp19I CCATGG 2 cut(s) 652, 700
BspACI CCGC 1 cut(s) 413
BspCNI CTCAG 2 cut(s) 114, 630
BspLI GGNNCC 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 633, 663
BspPI GGATC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 505
BsrGI TGTACA 2 cut(s) 459, 709
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 652, 700
BssMI GATC 4 cut(s) 60, 111, 154, 589
BssT1I CCWWGG 2 cut(s) 652, 700
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 33, 118, 445
Bst6I CTCTTC 1 cut(s) 589
BstAUI TGTACA 2 cut(s) 459, 709
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 101, 638
BstDSI CCRYGG 2 cut(s) 652, 700
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 4 cut(s) 63, 114, 157, 592
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 4 cut(s) 60, 111, 154, 589
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 2 cut(s) 122, 354
BtgI CCRYGG 2 cut(s) 652, 700
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 3 cut(s) 561, 635, 687
BveI ACCTGC 2 cut(s) 633, 663
Cac8I GCNNGC 1 cut(s) 519
Csp6I GTAC 3 cut(s) 119, 460, 710
CviAII CATG 2 cut(s) 653, 701
CviQI GTAC 3 cut(s) 119, 460, 710
DdeI CTNAG 2 cut(s) 101, 638
DpnI GATC 4 cut(s) 62, 113, 156, 591
DpnII GATC 4 cut(s) 60, 111, 154, 589
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 652, 700
Eco57I CTGAAG 2 cut(s) 152, 711
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 652, 700
ErhI CCWWGG 2 cut(s) 652, 700
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 2 cut(s) 656, 704
FatI CATG 2 cut(s) 652, 700
FbaI TGATCA 2 cut(s) 60, 589
FblI GTMKAC 1 cut(s) 648
FokI GGATG 1 cut(s) 369
FspBI CTAG 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 656, 704
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 6 cut(s) 82, 359, 367, 437, 604, 617
HphI GGTGA 4 cut(s) 106, 120, 195, 266
Hpy166II GTNNAC 5 cut(s) 97, 310, 462, 649, 710
Hpy188I TCNGA 2 cut(s) 235, 589
Hpy188III TCNNGA 2 cut(s) 79, 404
Hpy8I GTNNAC 5 cut(s) 97, 310, 462, 649, 710
HpyAV CCTTC 2 cut(s) 618, 636
HpyCH4III ACNGT 3 cut(s) 33, 118, 445
HpyCH4IV ACGT 2 cut(s) 93, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpyF3I CTNAG 2 cut(s) 101, 638
HpySE526I ACGT 2 cut(s) 93, 632
Hsp92II CATG 2 cut(s) 656, 704
Ksp22I TGATCA 2 cut(s) 60, 589
Kzo9I GATC 4 cut(s) 60, 111, 154, 589
LweI GCATC 3 cut(s) 226, 388, 466
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 93, 632
MaeIII GTNAC 4 cut(s) 126, 201, 538, 633
MalI GATC 4 cut(s) 62, 113, 156, 591
MboI GATC 4 cut(s) 60, 111, 154, 589
MboII GAAGA 4 cut(s) 34, 82, 504, 576
MluCI AATT 2 cut(s) 265, 337
MlyI GAGTC 3 cut(s) 353, 598, 611
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 4 cut(s) 110, 199, 396, 755
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 54, 705
MspA1I CMGCKG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 572
Mva1269I GAATGC 2 cut(s) 263, 500
MvaI CCWGG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 514
NcoI CCATGG 2 cut(s) 652, 700
NdeII GATC 4 cut(s) 60, 111, 154, 589
NlaIII CATG 2 cut(s) 656, 704
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 4 cut(s) 126, 201, 538, 633
PctI GAATGC 2 cut(s) 263, 500
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 82, 367, 437
PleI GAGTC 3 cut(s) 353, 598, 611
PpsI GAGTC 3 cut(s) 353, 598, 611
Psp6I CCWGG 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 126
RsaI GTAC 3 cut(s) 120, 461, 711
RsaNI GTAC 3 cut(s) 119, 460, 710
RseI CAYNNNNRTG 2 cut(s) 54, 705
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 4 cut(s) 60, 111, 154, 589
SchI GAGTC 3 cut(s) 353, 598, 611
ScrFI CCNGG 1 cut(s) 572
SfaNI GCATC 3 cut(s) 226, 388, 466
SfcI CTRYAG 2 cut(s) 122, 354
SmiMI CAYNNNNRTG 2 cut(s) 54, 705
Sse9I AATT 2 cut(s) 265, 337
SsiI CCGC 1 cut(s) 413
SspI AATATT 3 cut(s) 195, 490, 716
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 570
StyI CCWWGG 2 cut(s) 652, 700
TaaI ACNGT 3 cut(s) 33, 118, 445
TaiI ACGT 2 cut(s) 96, 635
TasI AATT 2 cut(s) 265, 337
TatI WGTACW 2 cut(s) 459, 709
TfiI GAWTC 3 cut(s) 82, 367, 437
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 3 cut(s) 568, 642, 694
TseFI GTSAC 4 cut(s) 126, 201, 538, 633
Tsp45I GTSAC 4 cut(s) 126, 201, 538, 633
TspDTI ATGAA 4 cut(s) 17, 35, 318, 411
TspRI CASTG 3 cut(s) 568, 642, 694
XcmI CCANNNNNNNNNTGG 2 cut(s) 400, 659
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.