RchiOBHm_Chr1g0329321

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029542
Physical Location & Seq
Reverse (-)
18819654 .. 18821212
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55865

Sequence Viewer

Length: 468 bp
ATGAAGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGATCTTGGTGCAGACAACGGTTTGGATGACTGTCTTGAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCCGTCAGAAAACCGCGAGCCAGTACAAGGGAGGGTTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAATGGGTGATTGCAAAATTTGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCGCAAATTTTGGTGCAATTGCTTACACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

155

Amino Acids

17.62

Weight (kDa)

9.21

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 52 - 92 3.9e-14 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0029542)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0329321
rosa_samantha Rh4DG117600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 2 cut(s) 352, 433
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 167
AclWI GGATC 3 cut(s) 87, 337, 350
AcsI RAATTY 4 cut(s) 59, 146, 245, 372
AcuI CTGAAG 1 cut(s) 95
AcvI CACGTG 1 cut(s) 287
AfaI GTAC 3 cut(s) 34, 52, 178
AfiI CCNNNNNNNGG 3 cut(s) 180, 352, 433
AgsI TTSAA 1 cut(s) 57
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 3 cut(s) 87, 337, 350
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 435
ApoI RAATTY 4 cut(s) 59, 146, 245, 372
Asp718I GGTACC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 287
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 439
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 285
Bme1390I CCNGG 2 cut(s) 340, 439
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 34, 154, 344
BmrFI CCNGG 2 cut(s) 340, 439
BpmI CTGGAG 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 340
BsaAI YACGTR 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 352, 433
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 2 cut(s) 36, 204
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 3 cut(s) 180, 352, 433
BseMI GCAATG 2 cut(s) 36, 204
BseMII CTCAG 2 cut(s) 56, 342
BseNI ACTGG 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 3 cut(s) 180, 352, 433
BsmAI GTCTC 1 cut(s) 285
BsnI GGCC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 79, 342
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 2 cut(s) 55, 341
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 34, 154, 344
BspPI GGATC 3 cut(s) 87, 337, 350
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 36, 204
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 79, 342
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 3 cut(s) 98, 110, 128
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 171, 336
BstDEI CTNAG 2 cut(s) 42, 328
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 2 cut(s) 82, 345
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 79, 342
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 338, 437
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 2 cut(s) 79, 342
BstYI RGATCY 2 cut(s) 79, 342
BsuRI GGCC 1 cut(s) 437
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 171, 336
CaiI CAGNNNCTG 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 33, 51, 177
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 71, 173, 334, 437
CviKI_1 RGCY 4 cut(s) 71, 173, 334, 437
CviQI GTAC 3 cut(s) 33, 51, 177
DdeI CTNAG 2 cut(s) 42, 328
DpnI GATC 2 cut(s) 81, 344
DpnII GATC 2 cut(s) 79, 342
Eco130I CCWWGG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 95
Eco72I CACGTG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 207, 216, 261, 321
FatI CATG 1 cut(s) 205
FokI GGATG 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 1 cut(s) 437
HapII CCGG 1 cut(s) 340
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 4 cut(s) 45, 75, 161, 331
Hpy188III TCNNGA 4 cut(s) 64, 113, 346, 461
HpyAV CCTTC 2 cut(s) 70, 113
HpyCH4III ACNGT 3 cut(s) 98, 110, 128
HpyCH4IV ACGT 2 cut(s) 286, 295
HpyCH4V TGCA 4 cut(s) 89, 242, 382, 402
HpyF3I CTNAG 2 cut(s) 42, 328
HpySE526I ACGT 2 cut(s) 286, 295
Hsp92II CATG 1 cut(s) 209
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 79, 342
MaeII ACGT 2 cut(s) 286, 295
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 81, 344
MboI GATC 2 cut(s) 79, 342
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 2 cut(s) 79, 342
MluCI AATT 6 cut(s) 59, 146, 245, 361, 372, 383
MnlI CCTC 5 cut(s) 4, 109, 134, 178, 435
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 397
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 340, 439
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 169
NciI CCSGG 1 cut(s) 340
NdeII GATC 2 cut(s) 79, 342
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 3 cut(s) 34, 154, 344
NmuCI GTSAC 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 2 cut(s) 352, 433
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 437
PspCI CACGTG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 34, 154, 344
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 2 cut(s) 79, 342
RsaI GTAC 3 cut(s) 34, 52, 178
RsaNI GTAC 3 cut(s) 33, 51, 177
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 2 cut(s) 79, 342
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 340, 439
SetI ASST 8 cut(s) 124, 145, 289, 298, 411, 422, 446, 451
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 6 cut(s) 59, 146, 245, 361, 372, 383
SsiI CCGC 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 338, 437
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 3 cut(s) 98, 110, 128
TaiI ACGT 2 cut(s) 289, 298
TaqI TCGA 1 cut(s) 139
TasI AATT 6 cut(s) 59, 146, 245, 361, 372, 383
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 17, 194
TspRI CASTG 1 cut(s) 131
Van91I CCANNNNNTGG 2 cut(s) 352, 433
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 4 cut(s) 59, 146, 245, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.