Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029449

Physical Location & Seq

Genomic Coordinates Reverse (-)

19585740 .. 19587109

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGGTGCACCACTACAAGTTGCTGCCATTGTTGTTAGGGTTCTTTCACAGCTGTGGAAGAAGCCCACTGTTGCAGTTAATCATTGTGTTGCTCATATTGAGATGGGAAGGATTGTGACTGGTGCGGATGATCCTGTTGTGTTGTATGTAAGTGGTGGGAACACACAGGTAATTGCATTGTTAAAAGCAAGAGAGAGTTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000408 GO:0002949 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

68

Amino Acids

7.21

Weight (kDa)

8.8

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	2 - 60	7.7e-15	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029449)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g28250
rosa_chinensis	RchiOBHm_Chr1g0329841

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	125
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	10
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	125
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	66
CviJI	RGCY	2 cut(s)	52, 64
CviKI_1	RGCY	2 cut(s)	52, 64
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
FaiI	YATR	2 cut(s)	96, 147
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	8, 74, 176
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	105, 147, 152
Lsp1109I	GCAGC	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	115, 200
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	171
MseI	TTAA	2 cut(s)	78, 182
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	52
NdeII	GATC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	78, 182
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	2 cut(s)	54, 171
SgeI	CNNG	5 cut(s)	29, 132, 146, 179, 201
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	78, 182
Tru9I	TTAA	2 cut(s)	78, 182
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	115
TspRI	CASTG	1 cut(s)	73
VneI	GTGCAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.