RchiOBHm_Chr1g0346201

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029551
Physical Location & Seq
Forward (+)
38333590 .. 38334240
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57247

Sequence Viewer

Length: 651 bp
ATGTCATTTTTTCAAGTTTCATCAAGTTCCGGTCACTATATCATGCATGACCTTATCAATGATCTAGCAAGCTTTGTATCAGGTGAATTTTGTTTTAGGTGGCAGGGCACTTCTTCACCCAACAATTTGAGCAAGACTCGTCACTTTTCATGTATGTTGAGATATTGTTATAATACTCCTATGTTTGAGGCTTTGCAGCAAGCTAAATGTTTGCACACCTTTCTAACATTAGTAACATCTTCTATGTGGTGGAAGATTTCTGGCAAAGGACTCTACGAGGCATTGCCGAAGTTTCAATGTTTAAGAATGCTCAAGTTATCATGGTACGATATTAAGGAATTGCCTGATTCAATTAACAACTTGAAACATCTTAAGCACTTGGACTTGTCTTACAGTTCCACCGAAAAGTTACCTGATGCAATTTGTACTTTGTATAACTTGCAAGTATTGTTGTTGTCATGGTGTAAACGCCTTACTGAACTGCCAGCCAACTTGGGAAGATTGATCAACTTGAGCCATCTGGATATTACATGTACAAAGTTGAAAAAGATGCCACCGTATATGGGTAAGTTGAAAGACCTCCAGATGCTACCAGAGTTTGTGCTAGACAAACACATGTGTACACTGCTGGGGATAATTTGGCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

216

Amino Acids

25.06

Weight (kDa)

8.92

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 94 - 197 4.3e-16 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029551)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0346201 RchiOBHm_Chr1g0357551

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 4 cut(s) 326, 427, 535, 622
AfiI CCNNNNNNNGG 1 cut(s) 563
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 2 cut(s) 530, 615
AgsI TTSAA 6 cut(s) 14, 296, 351, 364, 544, 574
AluBI AGCT 2 cut(s) 72, 203
AluI AGCT 2 cut(s) 72, 203
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 95, 108
BaeGI GKGCMC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 525
BclI TGATCA 1 cut(s) 504
BfaI CTAG 2 cut(s) 65, 605
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmsI GCATC 3 cut(s) 406, 540, 576
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 296, 532
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMI GCAATG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 628
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 563
BsmI GAATGC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 110
Bsp1407I TGTACA 2 cut(s) 533, 620
Bsp143I GATC 2 cut(s) 61, 504
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 281
BsrGI TGTACA 2 cut(s) 533, 620
BssMI GATC 2 cut(s) 61, 504
Bst4CI ACNGT 2 cut(s) 395, 558
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 2 cut(s) 533, 620
BstC8I GCNNGC 3 cut(s) 70, 201, 486
BstKTI GATC 2 cut(s) 64, 507
BstMBI GATC 2 cut(s) 61, 504
BstNSI RCATGY 2 cut(s) 534, 619
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 623
BtsIMutI CAGTG 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 70, 201, 486
Csp6I GTAC 4 cut(s) 325, 426, 534, 621
CviAII CATG 7 cut(s) 43, 47, 150, 321, 459, 531, 616
CviJI RGCY 5 cut(s) 72, 191, 203, 488, 516
CviKI_1 RGCY 5 cut(s) 72, 191, 203, 488, 516
CviQI GTAC 4 cut(s) 325, 426, 534, 621
DpnI GATC 2 cut(s) 63, 506
DpnII GATC 2 cut(s) 61, 504
EcoT22I ATGCAT 1 cut(s) 48
FaeI CATG 7 cut(s) 46, 50, 153, 324, 462, 534, 619
FatI CATG 7 cut(s) 42, 46, 149, 320, 458, 530, 615
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 65, 605
GluI GCNGC 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 566
HapII CCGG 1 cut(s) 30
Hin1II CATG 7 cut(s) 46, 50, 153, 324, 462, 534, 619
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 3 cut(s) 136, 270, 347
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 95, 108
Hpy166II GTNNAC 3 cut(s) 467, 621, 623
Hpy188III TCNNGA 2 cut(s) 521, 583
Hpy8I GTNNAC 3 cut(s) 467, 621, 623
HpyCH4III ACNGT 2 cut(s) 395, 558
HpyCH4V TGCA 5 cut(s) 46, 196, 214, 419, 442
Hsp92II CATG 7 cut(s) 46, 50, 153, 324, 462, 534, 619
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 2 cut(s) 61, 504
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 3 cut(s) 406, 540, 576
MaeI CTAG 2 cut(s) 65, 605
MaeIII GTNAC 4 cut(s) 32, 140, 232, 408
MalI GATC 2 cut(s) 63, 506
MboI GATC 2 cut(s) 61, 504
MboII GAAGA 4 cut(s) 105, 231, 265, 510
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 6 cut(s) 86, 124, 338, 351, 420, 636
MlyI GAGTC 2 cut(s) 130, 264
MnlI CCTC 3 cut(s) 181, 271, 590
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 5 cut(s) 302, 333, 354, 372, 649
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 312
NdeII GATC 2 cut(s) 61, 504
NlaIII CATG 7 cut(s) 46, 50, 153, 324, 462, 534, 619
NmuCI GTSAC 2 cut(s) 32, 140
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 2 cut(s) 534, 619
PciI ACATGT 2 cut(s) 530, 615
PctI GAATGC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 2 cut(s) 130, 264
PpsI GAGTC 2 cut(s) 130, 264
PscI ACATGT 2 cut(s) 530, 615
PsiI TTATAA 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 628
RsaI GTAC 4 cut(s) 326, 427, 535, 622
RsaNI GTAC 4 cut(s) 325, 426, 534, 621
SaqAI TTAA 5 cut(s) 302, 333, 354, 372, 649
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 2 cut(s) 61, 504
SchI GAGTC 2 cut(s) 130, 264
SduI GDGCHC 1 cut(s) 110
SetI ASST 8 cut(s) 54, 74, 85, 101, 205, 221, 415, 582
SfaNI GCATC 3 cut(s) 406, 540, 576
SmlI CTYRAG 3 cut(s) 311, 371, 511
SmoI CTYRAG 3 cut(s) 311, 371, 511
Sse9I AATT 6 cut(s) 86, 124, 338, 351, 420, 636
SspMI CTAG 2 cut(s) 65, 605
TaaI ACNGT 2 cut(s) 395, 558
TasI AATT 6 cut(s) 86, 124, 338, 351, 420, 636
TatI WGTACW 3 cut(s) 425, 533, 620
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 5 cut(s) 302, 333, 354, 372, 649
Tru9I TTAA 5 cut(s) 302, 333, 354, 372, 649
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 2 cut(s) 32, 140
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 2 cut(s) 32, 140
TspDTI ATGAA 2 cut(s) 9, 138
TspRI CASTG 1 cut(s) 630
Vha464I CTTAAG 1 cut(s) 371
XapI RAATTY 1 cut(s) 86
XceI RCATGY 2 cut(s) 534, 619
XspI CTAG 2 cut(s) 65, 605
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.