RchiOBHm_Chr1g0381951
ERF Family

Transducin WD40 repeat-like superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
67036656 .. 67037181
526 bp
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UTR
Exon/CDS
Intron
PRQ60501

Sequence Viewer

Length: 180 bp
ATGAAAGTGGGGATGAGGATATCGGCGAGTCATCAGCCGTGCTGCGGTCGGCGAGTGGTGGCGAGGAAGAAGAGGGCCGCCGGAGATGGATTCGTCACGGGGGCGGGTTTGGAGTCAGAGAAGGATCAGGTTCGTGCGGCGACGATGCTGAGCTTGGGCAGCGACGATAGGGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.28

Weight (kDa)

9.69

Isoelectric Point (pI)

20.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029590)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0381951
rosa_samantha Rh1CG427600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 45, 78, 104, 137
AclWI GGATC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 42, 159
AspS9I GGNCC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 29, 171
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 22
BisI GCNGC 4 cut(s) 43, 78, 138, 160
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 4 cut(s) 44, 79, 139, 161
BmgT120I GGNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 29, 171
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 124
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 4 cut(s) 45, 78, 104, 137
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 132
BssMI GATC 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 29, 171
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 75
CviJI RGCY 3 cut(s) 37, 77, 153
CviKI_1 RGCY 3 cut(s) 37, 77, 153
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 21
EcoRV GATATC 1 cut(s) 21
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 43, 78, 138, 160
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 4 cut(s) 43, 78, 138, 160
GluI GCNGC 4 cut(s) 43, 78, 138, 160
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 81
HinfI GANTC 3 cut(s) 28, 90, 113
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 145, 167
HpyAV CCTTC 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 94, 113
Lsp1109I GCAGC 2 cut(s) 29, 171
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 79, 82
MlyI GAGTC 2 cut(s) 37, 122
MnlI CCTC 3 cut(s) 9, 57, 66
MspI CCGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 4 cut(s) 44, 79, 139, 161
PleI GAGTC 2 cut(s) 36, 121
PpsI GAGTC 2 cut(s) 36, 121
PspPI GGNCC 1 cut(s) 75
SatI GCNGC 4 cut(s) 43, 78, 138, 160
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 2 cut(s) 37, 122
SetI ASST 2 cut(s) 132, 155
SfaNI GCATC 1 cut(s) 135
SsiI CCGC 4 cut(s) 45, 78, 104, 137
TauI GCSGC 2 cut(s) 80, 140
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 42, 159
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.