Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029827

Physical Location & Seq

Genomic Coordinates Forward (+)

517292 .. 517750

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTGGAACCAATTTACAGATCGATCCAAGGGCAACATAAGGCTGGCAACTTACTTTCCCTCAGTAGATATGAAGAAAGACAGAAAAAAAAAGAGTGCTAGTGATTCCGTTGCATGTTTAGGAATGTTTGGAACTTTAGAGTTGCAACCAGAAATTAGTGAAGTAGTTGATTCAACGGTTGAGCCCCTGAGAACTTTAAGTCGCAAGACAGATGGCCAATTTATAGCAGTGTACTTGAGGGTTGAGATGTTGGAGCAGAATGGTTGCCAAGGAGATGAAAGTGGAACAAAAAGTTTTTACAATCCGCAAGAGATCGCTTTATTTCTGAGGAAAATTGGATTTCGTAAGGATACTACCATTTATGTAACTGAATCAAAATGGGACAGCAGCCTTGATAATCTGAAAAATATCTTTCCCAAAACTTATGTAAAGGTACATGCTTTTTCTACTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0010412 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0019187 GO:0030312 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0051753 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097502 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

152

Amino Acids

17.36

Weight (kDa)

8.83

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029827)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0084891
rosa_samantha	Rh2CG006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	214
AfaI	GTAC	2 cut(s)	233, 435
AgsI	TTSAA	1 cut(s)	174
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	27, 268
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	27, 268
BseMII	CTCAG	3 cut(s)	75, 179, 317
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	19, 23, 312
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	3 cut(s)	74, 180, 318
BspDI	ATCGAT	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	27, 268
BssMI	GATC	3 cut(s)	19, 23, 312
BssT1I	CCWWGG	2 cut(s)	27, 268
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	61, 188, 326
BstKTI	GATC	3 cut(s)	22, 26, 315
BstMBI	GATC	3 cut(s)	19, 23, 312
BstNSI	RCATGY	2 cut(s)	117, 440
BstV1I	GCAGC	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	232, 434
CviAII	CATG	2 cut(s)	114, 437
CviJI	RGCY	4 cut(s)	43, 184, 216, 390
CviKI_1	RGCY	4 cut(s)	43, 184, 216, 390
CviQI	GTAC	2 cut(s)	232, 434
DdeI	CTNAG	3 cut(s)	61, 188, 326
DpnI	GATC	3 cut(s)	21, 25, 314
DpnII	GATC	3 cut(s)	19, 23, 312
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	27, 268
Eco24I	GRGCYC	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	27, 268
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	27, 268
FaeI	CATG	2 cut(s)	117, 440
FaiI	YATR	7 cut(s)	38, 71, 115, 224, 363, 426, 438
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	113, 436
Fnu4HI	GCNGC	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	117, 440
HinfI	GANTC	3 cut(s)	104, 170, 371
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	327, 402
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	113, 145
HpyF3I	CTNAG	3 cut(s)	61, 188, 326
Hsp92II	CATG	2 cut(s)	117, 440
Kzo9I	GATC	3 cut(s)	19, 23, 312
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	3 cut(s)	29, 162, 200
Lsp1109I	GCAGC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	21, 25, 314
MboI	GATC	3 cut(s)	19, 23, 312
MboII	GAAGA	2 cut(s)	85, 443
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	4 cut(s)	11, 153, 218, 333
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	70, 231, 321
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	216
NdeII	GATC	3 cut(s)	19, 23, 312
NlaIII	CATG	2 cut(s)	117, 440
NlaIV	GGNNCC	1 cut(s)	8
NspI	RCATGY	2 cut(s)	117, 440
PfeI	GAWTC	3 cut(s)	104, 170, 371
PkrI	GCNGC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	8
RsaI	GTAC	2 cut(s)	233, 435
RsaNI	GTAC	2 cut(s)	232, 434
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	3 cut(s)	19, 23, 312
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	11, 153, 218, 333
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	27, 268
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	11, 153, 218, 333
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	104, 170, 371
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	387
TspDTI	ATGAA	2 cut(s)	86, 291
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	234
XceI	RCATGY	2 cut(s)	117, 440
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.