RchiOBHm_Chr2g0095101

Tubulin--tyrosine ligase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029703
Physical Location & Seq
Reverse (-)
7967504 .. 7969098
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47009

Sequence Viewer

Length: 432 bp
ATGTTTTCTTCATTTTGTTGTTTCCTTTTCAGTTGCCATGTCTTGATTCGGGGAAATCTGAAATCCTTTAGAAGGGACCTCACTGGCCGACTTATTATATGTACCACGGAATTTTCCTTCATTACAGTCTCTGGAGGTGGATATTCCTGGCCCTTTTGGAGAAAGTTCAGCTCTGAGCCAAATTTCAGAGTATCTCCTTTTCTCTTTATGCCAGAGGGGCCATTAGCATCAGCTGTGAGTTTCTGTATATTATGGCCAATCAAGAATGTTGAAAAAGGTAATGAATGCGTTCCTGATTATCTTTTTGGTATTGGGGAGGACGAGCAACGTTCTGCCAGATTTACAGCTACACCAGAGAAGTATTTTATTCGGCACCTGATCCAAAGGATGCAGAAATCCTACGGACAGGTGACCAAGTGGATGAGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TTL

Protein Analysis

143

Amino Acids

16.67

Weight (kDa)

9.32

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029703)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0095101
rosa_samantha Rh2DG096700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 372
AclI AACGTT 1 cut(s) 328
AclWI GGATC 1 cut(s) 373
AcoI YGGCCR 2 cut(s) 85, 254
AcsI RAATTY 2 cut(s) 110, 181
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 3 cut(s) 171, 233, 347
AluI AGCT 3 cut(s) 171, 233, 347
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 373
AlwNI CAGNNNCTG 1 cut(s) 131
AoxI GGCC 4 cut(s) 85, 149, 218, 254
ApoI RAATTY 2 cut(s) 110, 181
Asp700I GAANNNNTTC 1 cut(s) 288
AspS9I GGNCC 3 cut(s) 76, 150, 218
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 256
BanI GGYRCC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 76, 150, 218
BmiI GGNNCC 3 cut(s) 77, 219, 374
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 236, 378
BpmI CTGGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 393, 426
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 88
BshFI GGCC 4 cut(s) 87, 151, 220, 256
BshNI GGYRCC 1 cut(s) 372
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 4 cut(s) 87, 151, 220, 256
Bsp143I GATC 1 cut(s) 378
BspANI GGCC 4 cut(s) 87, 151, 220, 256
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 77, 219, 374
BspPI GGATC 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 105
BstEII GGTNACC 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 2 cut(s) 393, 426
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 378
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 148
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 146
BsuRI GGCC 4 cut(s) 87, 151, 220, 256
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 393, 426
BtsIMutI CAGTG 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 76, 150, 218
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 38
CviJI RGCY 8 cut(s) 87, 151, 171, 178, 220, 233, 256, 347
CviKI_1 RGCY 8 cut(s) 87, 151, 171, 178, 220, 233, 256, 347
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
EaeI YGGCCR 2 cut(s) 85, 254
Eco47I GGWCC 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 409
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 41
FaiI YATR 7 cut(s) 39, 98, 100, 209, 248, 253, 430
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 37
FokI GGATG 1 cut(s) 400
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 4 cut(s) 87, 151, 220, 256
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 46
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 60, 175, 188
Hpy188III TCNNGA 4 cut(s) 43, 132, 262, 293
HpyAV CCTTC 2 cut(s) 66, 127
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 1 cut(s) 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 378
LweI GCATC 2 cut(s) 236, 378
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 409
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 256
MluCI AATT 2 cut(s) 110, 181
MluNI TGGCCA 1 cut(s) 256
MnlI CCTC 5 cut(s) 89, 128, 208, 310, 417
Mox20I TGGCCA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 256
Msp20I TGGCCA 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 378
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 3 cut(s) 77, 219, 374
NmuCI GTSAC 1 cut(s) 409
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 146
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 3 cut(s) 77, 219, 374
PspPI GGNCC 3 cut(s) 76, 150, 218
PspPPI RGGWCCY 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 3 cut(s) 76, 150, 218
ScrFI CCNGG 1 cut(s) 148
SetI ASST 9 cut(s) 81, 139, 173, 235, 280, 331, 349, 378, 411
SfaNI GCATC 2 cut(s) 236, 378
SinI GGWCC 1 cut(s) 76
Sse9I AATT 2 cut(s) 110, 181
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 331
TasI AATT 2 cut(s) 110, 181
TfiI GAWTC 1 cut(s) 46
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 109, 297
TspGWI ACGGA 2 cut(s) 122, 417
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 70
XapI RAATTY 2 cut(s) 110, 181
XmnI GAANNNNTTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.