RchiOBHm_Chr2g0107931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029719
Physical Location & Seq
Reverse (-)
19507857 .. 19510710
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48192

Sequence Viewer

Length: 405 bp
ATGATATGGGGTAGTAGTGCTTTTCTTTCTCTCTCTCGTCCGAAACGTGAAACCCAAGAGCAAAGAAAACTCTCCAATCTCTTTCTTCCTCCACCGACCATCAATTGGCGCCAAACAACCTTCAATGGCTTCGTCTCAGCCTTGCGAAGCTACCTGAGGCAGTCTTGGGTCACGGAACAGCCGGAAGCGGCGGCGAAGAGGTCGGGTTTGTCTAGCTTCGATTTGGACTCCAAGCATGGTAGCTCGAGCTACCGACCACCAAACCGTCTCAAACTCCATCCACAGATTCGCATCAACCTCCTGAAGCTCCCAGAACCAACCTTGCACGGTGGCGCAGCCCGTAGCAGCAGCTGCAAGTCAACCCCACGGAACCGAAGCTTTCGATCAAGATATCTCGAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.33

Weight (kDa)

11.3

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029719)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0107931
rosa_multiflora Rmu_sc0000431.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 105
AciI CCGC 2 cut(s) 188, 191
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 7 cut(s) 150, 216, 243, 249, 307, 351, 378
AluI AGCT 7 cut(s) 150, 216, 243, 249, 307, 351, 378
Alw26I GTCTC 2 cut(s) 139, 272
AlwNI CAGNNNCTG 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 244, 395
ApeKI GCWGC 4 cut(s) 335, 345, 348, 351
AspLEI GCGC 2 cut(s) 111, 335
AvaI CYCGRG 2 cut(s) 244, 395
AxyI CCTNAGG 1 cut(s) 155
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 338, 347, 357, 360
BccI CCATC 2 cut(s) 107, 285
BcoDI GTCTC 2 cut(s) 139, 272
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 6 cut(s) 189, 192, 336, 346, 349, 352
BlsI GCNGC 6 cut(s) 190, 193, 337, 347, 350, 353
BmeT110I CYCGRG 2 cut(s) 244, 395
BmiI GGNNCC 2 cut(s) 110, 371
BmsI GCATC 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse21I CCTNAGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 146, 150
BseXI GCAGC 4 cut(s) 338, 347, 357, 360
BshNI GGYRCC 1 cut(s) 108
BsiHKCI CYCGRG 2 cut(s) 244, 395
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 139, 272
BsmBI CGTCTC 2 cut(s) 139, 272
BsoBI CYCGRG 2 cut(s) 244, 395
Bsp143I GATC 1 cut(s) 383
BspACI CCGC 2 cut(s) 188, 191
BspCNI CTCAG 2 cut(s) 147, 149
BspLI GGNNCC 2 cut(s) 110, 371
BspT107I GGYRCC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 383
BssNI GRCGYC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 266, 329
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 136, 155
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 2 cut(s) 111, 335
BstKTI GATC 1 cut(s) 386
BstMAI GTCTC 2 cut(s) 139, 272
BstMBI GATC 1 cut(s) 383
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstV1I GCAGC 4 cut(s) 338, 347, 357, 360
Bsu36I CCTNAGG 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 2 cut(s) 111, 335
CviAII CATG 1 cut(s) 236
DdeI CTNAG 2 cut(s) 136, 155
DinI GGCGCC 1 cut(s) 110
DpnI GATC 1 cut(s) 385
DpnII GATC 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 155
Eco88I CYCGRG 2 cut(s) 244, 395
EcoRV GATATC 1 cut(s) 392
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
Esp3I CGTCTC 2 cut(s) 139, 272
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 7, 237
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 6 cut(s) 189, 192, 336, 346, 349, 352
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 6 cut(s) 189, 192, 336, 346, 349, 352
FspBI CTAG 1 cut(s) 213
GlaI GCGC 2 cut(s) 110, 334
GluI GCNGC 6 cut(s) 189, 192, 336, 346, 349, 352
HaeII RGCGCY 1 cut(s) 112
HapII CCGG 1 cut(s) 182
HhaI GCGC 2 cut(s) 111, 335
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 2 cut(s) 109, 333
HinP1I GCGC 2 cut(s) 109, 333
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 2 cut(s) 227, 286
HpaII CCGG 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 4 cut(s) 301, 387, 395, 397
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 266, 329
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 325, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 2 cut(s) 136, 155
HpySE526I ACGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 2 cut(s) 109, 333
KasI GGCGCC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 383
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 4 cut(s) 167, 195, 314, 324
Lsp1109I GCAGC 4 cut(s) 338, 347, 357, 360
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 385
MboI GATC 1 cut(s) 383
MboII GAAGA 2 cut(s) 77, 208
MfeI CAATTG 1 cut(s) 103
MluCI AATT 1 cut(s) 103
Mly113I GGCGCC 1 cut(s) 109
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 99, 150, 192, 308
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 351
NarI GGCGCC 1 cut(s) 109
NdeII GATC 1 cut(s) 383
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 110, 371
NmuCI GTSAC 1 cut(s) 169
PaeR7I CTCGAG 2 cut(s) 244, 395
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 6 cut(s) 190, 193, 337, 347, 350, 353
PleI GAGTC 1 cut(s) 221
PluTI GGCGCC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 110, 371
PspXI VCTCGAGB 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 351
SatI GCNGC 6 cut(s) 189, 192, 336, 346, 349, 352
Sau3AI GATC 1 cut(s) 383
SchI GAGTC 1 cut(s) 221
SfaNI GCATC 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 110
Sfr274I CTCGAG 2 cut(s) 244, 395
SlaI CTCGAG 2 cut(s) 244, 395
SmlI CTYRAG 2 cut(s) 244, 395
SmoI CTYRAG 2 cut(s) 244, 395
Sse9I AATT 1 cut(s) 103
SsiI CCGC 2 cut(s) 188, 191
SspDI GGCGCC 1 cut(s) 108
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 266, 329
TaiI ACGT 1 cut(s) 49
TaqI TCGA 4 cut(s) 219, 245, 382, 396
TasI AATT 1 cut(s) 103
TauI GCSGC 2 cut(s) 191, 194
TfiI GAWTC 1 cut(s) 286
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 4 cut(s) 335, 345, 348, 351
Tsp45I GTSAC 1 cut(s) 169
TspGWI ACGGA 2 cut(s) 188, 382
Van91I CCANNNNNTGG 1 cut(s) 105
XhoI CTCGAG 2 cut(s) 244, 395
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.