RchiOBHm_Chr2g0114731

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029732
Physical Location & Seq
Forward (+)
26602086 .. 26602493
408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48794

Sequence Viewer

Length: 408 bp
ATGGGTATAGATGGTTGGAGAATTGCATTCCATCTGGTTGGGCTCATTAGTCTCATAGTCGGTATATTGGTTCTCCTCTTTACTAATGATCCACACTATGTACAGAACAATGATAGAGCTAAAGATGAAATGCCACATACTCTTTCAGAAGAAGTGAAGGACCTGATTAAAGAATCCAAGTCGGTTATCAAAATCCCAACTTTTCAAATACTAATTGCTCAGGGTGTCTTTGGATCATTCCCCTGGTCAGGTTTGTCATTTGCTCCTTTGTGGTTGGAGCTTATTAGCTTCTCCCACAAAGAAACGGCAGTTCTTAATTTGGACCATATTTATAATTGGCGCCTCACTTGGAAGTCTCTTTGGAGGAAAAATGGGGGATGTCCTTGCAAAACCGTTTCCCAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

135

Amino Acids

15.38

Weight (kDa)

7.77

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 101 4.8e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029732)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0114731
rosa_samantha Rh2CG253400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 339
AclWI GGATC 2 cut(s) 83, 241
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 3 cut(s) 119, 280, 288
AluI AGCT 3 cut(s) 119, 280, 288
Alw26I GTCTC 2 cut(s) 56, 360
AlwI GGATC 2 cut(s) 83, 241
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 160, 322
AvaII GGWCC 2 cut(s) 160, 322
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 45
BccI CCATC 2 cut(s) 5, 39
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 56, 360
BfaI CTAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 2 cut(s) 160, 322
BmgT120I GGNCC 2 cut(s) 160, 322
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 248
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 2 cut(s) 56, 360
BsmI GAATGC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 2 cut(s) 88, 233
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 2 cut(s) 83, 241
BspT107I GGYRCC 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 2 cut(s) 88, 233
BssNI GRCGYC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 2 cut(s) 91, 236
BstMAI GTCTC 2 cut(s) 56, 360
BstMBI GATC 2 cut(s) 88, 233
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 383
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 160, 322
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 4 cut(s) 43, 119, 280, 288
CviKI_1 RGCY 4 cut(s) 43, 119, 280, 288
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 219
DinI GGCGCC 1 cut(s) 341
DpnI GATC 2 cut(s) 90, 235
DpnII GATC 2 cut(s) 88, 233
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 160, 322
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 341
EheI GGCGCC 1 cut(s) 341
FaiI YATR 7 cut(s) 8, 56, 65, 99, 138, 327, 333
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 45
FspBI CTAG 1 cut(s) 406
GlaI GCGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 343
HhaI GCGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 26, 387
HpyF3I CTNAG 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 340
HspAI GCGC 1 cut(s) 340
KasI GGCGCC 1 cut(s) 339
Kzo9I GATC 2 cut(s) 88, 233
LmnI GCTCC 2 cut(s) 268, 277
LpnPI CCDG 6 cut(s) 20, 176, 206, 229, 234, 256
MaeI CTAG 1 cut(s) 406
MalI GATC 2 cut(s) 90, 235
MboI GATC 2 cut(s) 88, 233
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 4 cut(s) 21, 213, 316, 334
Mly113I GGCGCC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 3 cut(s) 86, 353, 357
MseI TTAA 2 cut(s) 168, 315
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 244
NarI GGCGCC 1 cut(s) 340
NdeII GATC 2 cut(s) 88, 233
NlaIV GGNNCC 1 cut(s) 341
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 173
PluTI GGCGCC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 160
PsiI TTATAA 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 2 cut(s) 160, 322
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 168, 315
Sau3AI GATC 2 cut(s) 88, 233
Sau96I GGNCC 2 cut(s) 160, 322
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 121, 165, 253, 282, 290
SfoI GGCGCC 1 cut(s) 341
SgeI CNNG 9 cut(s) 47, 175, 190, 233, 255, 256, 261, 360, 396
SinI GGWCC 2 cut(s) 160, 322
Sse9I AATT 4 cut(s) 21, 213, 316, 334
SspDI GGCGCC 1 cut(s) 339
SspMI CTAG 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 394
TasI AATT 4 cut(s) 21, 213, 316, 334
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 168, 315
Tru9I TTAA 2 cut(s) 168, 315
TspDTI ATGAA 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 160, 322
XspI CTAG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.