RchiOBHm_Chr2g0117951

Cell morphogenesis N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029752
Physical Location & Seq
Reverse (-)
30289776 .. 30290972
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49081

Sequence Viewer

Length: 960 bp
ATGAGCAGTCTGCATCTGGGGGAAATCTGCCAACATTTGAAGGGGGTGCAACCTCTTGTTCTTAAAGGACTTATGTCAACAGTTAGTCACGGTGTTTCCATTGAAGTTCTCTCACGGATCACAGTGCACTCATGTGACTCAATATTTGGAAATGCAGAGGCACGACTCTTGATGCACATCACATGTTTACTTCCCTGGCTCTGCTTGCAGCTTAGCAAGGATCCAGTGATGGGACCTGCTTCACCACTCCAGCAGCAGTACCAGAAAGCTTGCTCTGTTGCTGCCAACATCTCTGTTTGGTGTAGAGAAAAATCATTAGACGAATTAGCTACTGTATTTATGATCTACTCTCGTGGTGAGATCAAAAGTATCACCAACCTCCTTGCTTGTGTCTCGCCACTATTATGCAATGAGTGGTTCCCAAAGCACTCAGCTTTGGCTTTTGGGCACTTATTACGGCTACTGGAGAAAGGGCCTGTTGAGTATCAGCGTGTGATATTGCTCATGCTCAAGGCGTTGCTCCAGCACACGCCAATGGATGCTGCCCAAAGTCCACACATGTATGCTATTGTGTCCCAGTTGGTGGAGAGCACATTGTGTTGGGAGGCACTGAGTGTATTGGAAGCGCTTCTGCAAAGCTGTAGCTCATTGCCAGGTTCTCACCCTCATGAATCTGGGTCGTTTGAGAATGGGATTGGCAGCAGCGATGATAAGATGCTAGCCCCTCAGACCTCATTTAAGGCTCGTAGTGGCCCGCTACAGTTTGGTCTGACATCACCGTTTGGAACAGGTTCAACACCAGCACAAGGGAGCTTAACTGAAACTGGAGTTTCATCTAGAGAAATGGCTTTGCATAACACCCAGCTTATTCTTGGGCGGGTTCTTGACAGCTGTGCCCTTGGGAGGAGAAGGGATTACAGAAGGCTGGTTCCTTTCGTAACTAGTATTGGGAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOR2-PAG1_C MOR2-PAG1_N MOR2-PAG1_mid

Protein Analysis

319

Amino Acids

34.75

Weight (kDa)

7.6

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOR2-PAG1_C PF14225 13 - 213 2.4e-42 Cell morphogenesis C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029752)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117951
rosa_samantha Rh2DG297600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 583
AciI CCGC 2 cut(s) 755, 877
AclWI GGATC 3 cut(s) 125, 215, 228
AdeI CACNNNGTG 2 cut(s) 597, 614
AfaI GTAC 1 cut(s) 260
AfeI AGCGCT 1 cut(s) 627
AfiI CCNNNNNNNGG 4 cut(s) 230, 583, 806, 903
AflIII ACRYGT 2 cut(s) 182, 558
AgsI TTSAA 3 cut(s) 40, 104, 795
AhlI ACTAGT 1 cut(s) 941
AjnI CCWGG 2 cut(s) 194, 652
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 9 cut(s) 211, 269, 329, 434, 639, 645, 813, 865, 891
AluI AGCT 9 cut(s) 211, 269, 329, 434, 639, 645, 813, 865, 891
Alw21I GWGCWC 2 cut(s) 129, 593
Alw26I GTCTC 1 cut(s) 397
Alw44I GTGCAC 1 cut(s) 125
AlwI GGATC 3 cut(s) 125, 215, 228
Aor51HI AGCGCT 1 cut(s) 627
AoxI GGCC 2 cut(s) 473, 751
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 6 cut(s) 208, 253, 281, 542, 699, 702
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
Asp700I GAANNNNTTC 2 cut(s) 627, 790
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 3 cut(s) 233, 473, 752
AsuHPI GGTGA 5 cut(s) 234, 364, 368, 653, 768
AsuNHI GCTAGC 1 cut(s) 718
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 3 cut(s) 129, 450, 898
BamHI GGATCC 1 cut(s) 220
BauI CACGAG 1 cut(s) 351
Bbv12I GWGCWC 2 cut(s) 129, 593
BbvI GCAGC 6 cut(s) 220, 265, 268, 529, 711, 714
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 473
BciT130I CCWGG 2 cut(s) 196, 654
BcoDI GTCTC 1 cut(s) 397
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 3 cut(s) 719, 837, 942
BfmI CTRYAG 2 cut(s) 640, 758
BfoI RGCGCY 1 cut(s) 629
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 6 cut(s) 209, 254, 282, 543, 700, 703
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 6 cut(s) 210, 255, 283, 544, 701, 704
Bme1390I CCNGG 2 cut(s) 196, 654
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 233, 473, 752
BmiI GGNNCC 5 cut(s) 222, 234, 419, 930, 953
BmrFI CCNGG 2 cut(s) 196, 654
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 4 cut(s) 22, 162, 529, 705
BmtI GCTAGC 1 cut(s) 722
BmuI ACTGGG 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 73
BpmI CTGGAG 4 cut(s) 233, 485, 506, 846
Bpu1102I GCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 194, 898
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 583, 806, 903
Bse1I ACTGG 4 cut(s) 224, 468, 577, 829
Bse3DI GCAATG 2 cut(s) 415, 647
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 2 cut(s) 196, 654
BseDI CCNNGG 2 cut(s) 194, 898
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 4 cut(s) 230, 583, 806, 903
BseMI GCAATG 2 cut(s) 415, 647
BseMII CTCAG 3 cut(s) 444, 602, 740
BseNI ACTGG 4 cut(s) 224, 468, 577, 829
BseRI GAGGAG 1 cut(s) 919
BseSI GKGCMC 3 cut(s) 129, 450, 898
BseXI GCAGC 6 cut(s) 220, 265, 268, 529, 711, 714
BseYI CCCAGC 1 cut(s) 861
BshFI GGCC 2 cut(s) 475, 753
BsiHKAI GWGCWC 2 cut(s) 129, 593
BslFI GGGAC 2 cut(s) 246, 559
BslI CCNNNNNNNGG 4 cut(s) 230, 583, 806, 903
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 2 cut(s) 246, 559
BsnI GGCC 2 cut(s) 475, 753
Bsp1286I GDGCHC 4 cut(s) 129, 450, 593, 898
Bsp143I GATC 4 cut(s) 117, 220, 342, 360
Bsp1720I GCTNAGC 1 cut(s) 212
BspACI CCGC 2 cut(s) 755, 877
BspANI GGCC 2 cut(s) 475, 753
BspCNI CTCAG 3 cut(s) 443, 603, 739
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 5 cut(s) 222, 234, 419, 930, 953
BspMI ACCTGC 1 cut(s) 244
BspOI GCTAGC 1 cut(s) 722
BspPI GGATC 3 cut(s) 125, 215, 228
BsrDI GCAATG 2 cut(s) 415, 647
BsrI ACTGG 4 cut(s) 224, 468, 577, 829
BssECI CCNNGG 2 cut(s) 194, 898
BssMI GATC 4 cut(s) 117, 220, 342, 360
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 898
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 196, 654
Bst4CI ACNGT 6 cut(s) 82, 92, 124, 334, 762, 780
BstC8I GCNNGC 4 cut(s) 206, 271, 720, 755
BstDEI CTNAG 4 cut(s) 212, 430, 611, 726
BstF5I GGATG 1 cut(s) 544
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 4 cut(s) 120, 223, 345, 363
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 4 cut(s) 117, 220, 342, 360
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 2 cut(s) 196, 654
BstNSI RCATGY 2 cut(s) 186, 562
BstPAI GACNNNNGTC 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 194, 652
BstSFI CTRYAG 2 cut(s) 640, 758
BstSLI GKGCMC 3 cut(s) 129, 450, 898
BstV1I GCAGC 6 cut(s) 220, 265, 268, 529, 711, 714
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 475, 753
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 3 cut(s) 129, 231, 608
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 4 cut(s) 206, 271, 720, 755
CciI TCATGA 1 cut(s) 667
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 3 cut(s) 233, 473, 752
Csp6I GTAC 1 cut(s) 259
CviAII CATG 5 cut(s) 132, 183, 505, 559, 668
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 212, 430, 611, 726
DpnI GATC 4 cut(s) 119, 222, 344, 362
DpnII GATC 4 cut(s) 117, 220, 342, 360
DraIII CACNNNGTG 2 cut(s) 597, 614
Eco130I CCWWGG 1 cut(s) 898
Eco47I GGWCC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 627
EcoO109I RGGNCCY 2 cut(s) 233, 473
EcoRII CCWGG 2 cut(s) 194, 652
EcoT14I CCWWGG 1 cut(s) 898
ErhI CCWWGG 1 cut(s) 898
FaeI CATG 5 cut(s) 135, 186, 508, 562, 671
FaqI GGGAC 2 cut(s) 246, 559
FatI CATG 5 cut(s) 131, 182, 504, 558, 667
FauI CCCGC 2 cut(s) 762, 870
Fnu4HI GCNGC 6 cut(s) 209, 254, 282, 543, 700, 703
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 6 cut(s) 209, 254, 282, 543, 700, 703
FspBI CTAG 3 cut(s) 719, 837, 942
GlaI GCGC 1 cut(s) 627
GluI GCNGC 6 cut(s) 209, 254, 282, 543, 700, 703
GsaI CCCAGC 1 cut(s) 865
GsuI CTGGAG 4 cut(s) 233, 485, 506, 846
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 2 cut(s) 475, 753
HhaI GCGC 1 cut(s) 628
Hin1II CATG 5 cut(s) 135, 186, 508, 562, 671
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 3 cut(s) 137, 165, 671
HphI GGTGA 5 cut(s) 234, 364, 368, 653, 768
Hpy166II GTNNAC 4 cut(s) 78, 127, 188, 554
Hpy188I TCNGA 2 cut(s) 729, 771
Hpy188III TCNNGA 4 cut(s) 169, 668, 837, 884
Hpy8I GTNNAC 4 cut(s) 78, 127, 188, 554
HpyAV CCTTC 3 cut(s) 34, 903, 915
HpyCH4III ACNGT 6 cut(s) 82, 92, 124, 334, 762, 780
HpyCH4V TGCA 9 cut(s) 13, 49, 127, 155, 175, 208, 408, 634, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 4 cut(s) 212, 430, 611, 726
Hsp92II CATG 5 cut(s) 135, 186, 508, 562, 671
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 4 cut(s) 117, 220, 342, 360
LmnI GCTCC 2 cut(s) 525, 810
Lsp1109I GCAGC 6 cut(s) 220, 265, 268, 529, 711, 714
LweI GCATC 4 cut(s) 22, 162, 529, 705
MaeI CTAG 3 cut(s) 719, 837, 942
MaeIII GTNAC 3 cut(s) 86, 134, 937
MalI GATC 4 cut(s) 119, 222, 344, 362
MboI GATC 4 cut(s) 117, 220, 342, 360
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 4 cut(s) 129, 450, 593, 898
MluCI AATT 1 cut(s) 323
MlyI GAGTC 2 cut(s) 131, 159
MnlI CCTC 8 cut(s) 63, 151, 389, 598, 675, 735, 742, 897
MroXI GAANNNNTTC 2 cut(s) 627, 790
MseI TTAA 3 cut(s) 63, 738, 815
MslI CAYNNNNRTG 5 cut(s) 132, 403, 533, 561, 666
MspA1I CMGCKG 1 cut(s) 891
MspR9I CCNGG 2 cut(s) 196, 654
MvaI CCWGG 2 cut(s) 196, 654
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 4 cut(s) 117, 220, 342, 360
NheI GCTAGC 1 cut(s) 718
NlaIII CATG 5 cut(s) 135, 186, 508, 562, 671
NlaIV GGNNCC 5 cut(s) 222, 234, 419, 930, 953
NmuCI GTSAC 2 cut(s) 86, 134
NspI RCATGY 2 cut(s) 186, 562
OliI CACNNNNGTG 1 cut(s) 132
PagI TCATGA 1 cut(s) 667
PciI ACATGT 2 cut(s) 182, 558
PdmI GAANNNNTTC 2 cut(s) 627, 790
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 6 cut(s) 210, 255, 283, 544, 701, 704
PleI GAGTC 2 cut(s) 131, 159
PpsI GAGTC 2 cut(s) 131, 159
PpuMI RGGWCCY 1 cut(s) 233
PscI ACATGT 2 cut(s) 182, 558
PshAI GACNNNNGTC 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 194, 652
PspFI CCCAGC 1 cut(s) 861
PspGI CCWGG 2 cut(s) 194, 652
PspN4I GGNNCC 5 cut(s) 222, 234, 419, 930, 953
PspPI GGNCC 3 cut(s) 233, 473, 752
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 891
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 5 cut(s) 132, 403, 533, 561, 666
SaqAI TTAA 3 cut(s) 63, 738, 815
SatI GCNGC 6 cut(s) 209, 254, 282, 543, 700, 703
Sau3AI GATC 4 cut(s) 117, 220, 342, 360
Sau96I GGNCC 3 cut(s) 233, 473, 752
SchI GAGTC 2 cut(s) 131, 159
ScrFI CCNGG 2 cut(s) 196, 654
SduI GDGCHC 4 cut(s) 129, 450, 593, 898
SfaNI GCATC 4 cut(s) 22, 162, 529, 705
SfcI CTRYAG 2 cut(s) 640, 758
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 5 cut(s) 132, 403, 533, 561, 666
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SpeI ACTAGT 1 cut(s) 941
Sse9I AATT 1 cut(s) 323
SsiI CCGC 2 cut(s) 755, 877
SspI AATATT 1 cut(s) 144
SspMI CTAG 3 cut(s) 719, 837, 942
StyD4I CCNGG 2 cut(s) 194, 652
StyI CCWWGG 1 cut(s) 898
TaaI ACNGT 6 cut(s) 82, 92, 124, 334, 762, 780
TasI AATT 1 cut(s) 323
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 3 cut(s) 63, 738, 815
Tru9I TTAA 3 cut(s) 63, 738, 815
TscAI CASTG 3 cut(s) 129, 231, 615
TseFI GTSAC 2 cut(s) 86, 134
TseI GCWGC 6 cut(s) 208, 253, 281, 542, 699, 702
Tsp45I GTSAC 2 cut(s) 86, 134
TspDTI ATGAA 2 cut(s) 684, 822
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 3 cut(s) 129, 231, 615
Van91I CCANNNNNTGG 1 cut(s) 583
VneI GTGCAC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 2 cut(s) 186, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XmnI GAANNNNTTC 2 cut(s) 627, 790
XspI CTAG 3 cut(s) 719, 837, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.