RchiOBHm_Chr2g0120051

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029754
Physical Location & Seq
Forward (+)
32736894 .. 32739928
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49270

Sequence Viewer

Length: 276 bp
ATGTTCTGGGCATGCGGAGAGCGTTTATCCTTACTACGTGCTTCACAGGTCATAATTTTGGACATCCATCTTAATCCCTCTCTCACCTGGCAACCAATTGACCATGCATTTACACCTGGTCAAAAGAGGAAACTATTCATAGCTGCTGATTCCCCTGAAGAAGAACATCATGGTACCTGCTTCCAAAAAGTATTTCAATTGAACGAATATCGTGGTTATCAGGATTTTGAGGTCGAACATGTGAACGTCCTGTACAGAAGGCAGGTCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

91

Amino Acids

10.72

Weight (kDa)

6.17

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029754)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0120051
rosa_samantha Rh2DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 185, 253
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 2 cut(s) 175, 254
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 2 cut(s) 197, 202
AjnI CCWGG 2 cut(s) 86, 115
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 134
Asp718I GGTACC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 88, 117
BfuAI ACCTGC 2 cut(s) 185, 253
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 88, 117
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 88, 117
BsaAI YACGTR 1 cut(s) 38
BseBI CCWGG 2 cut(s) 88, 117
BseGI GGATG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 252
BspACI CCGC 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 175
BspMI ACCTGC 2 cut(s) 185, 253
BspT107I GGYRCC 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 88, 117
BstAUI TGTACA 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 63
BstNI CCWGG 2 cut(s) 88, 117
BstNSI RCATGY 2 cut(s) 15, 242
BstSCI CCNGG 2 cut(s) 86, 115
BstV1I GCAGC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 63
BveI ACCTGC 2 cut(s) 185, 253
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 174, 253
CviAII CATG 5 cut(s) 12, 104, 170, 239, 273
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
CviQI GTAC 2 cut(s) 174, 253
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 86, 115
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 5 cut(s) 15, 107, 173, 242, 276
FaiI YATR 7 cut(s) 13, 53, 105, 140, 171, 240, 274
FatI CATG 5 cut(s) 11, 103, 169, 238, 272
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
Hin1II CATG 5 cut(s) 15, 107, 173, 242, 276
HinfI GANTC 1 cut(s) 149
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 252
HpyCH4IV ACGT 2 cut(s) 37, 246
HpyCH4V TGCA 1 cut(s) 107
HpySE526I ACGT 2 cut(s) 37, 246
Hsp92II CATG 5 cut(s) 15, 107, 173, 242, 276
KpnI GGTACC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 130
MabI ACCWGGT 1 cut(s) 115
MaeII ACGT 2 cut(s) 37, 246
MboII GAAGA 2 cut(s) 170, 173
MfeI CAATTG 2 cut(s) 96, 197
MluCI AATT 3 cut(s) 54, 96, 197
MnlI CCTC 3 cut(s) 88, 120, 223
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 88, 117
MunI CAATTG 2 cut(s) 96, 197
MvaI CCWGG 2 cut(s) 88, 117
NlaIII CATG 5 cut(s) 15, 107, 173, 242, 276
NlaIV GGNNCC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 2 cut(s) 15, 242
PaeI GCATGC 1 cut(s) 15
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 38
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 86, 115
PspGI CCWGG 2 cut(s) 86, 115
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
RsaI GTAC 2 cut(s) 175, 254
RsaNI GTAC 2 cut(s) 174, 253
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 88, 117
SetI ASST 9 cut(s) 40, 51, 89, 118, 145, 179, 234, 249, 267
SexAI ACCWGGT 1 cut(s) 115
SinI GGWCC 1 cut(s) 265
SphI GCATGC 1 cut(s) 15
Sse9I AATT 3 cut(s) 54, 96, 197
SsiI CCGC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 86, 115
TaiI ACGT 2 cut(s) 40, 249
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 54, 96, 197
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 2 cut(s) 15, 242
XmnI GAANNNNTTC 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.