Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029708

Physical Location & Seq

Genomic Coordinates Forward (+)

42327047 .. 42327955

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAGGATCACCCTCTTTGTGGTCTTCACCTGCATAGGGTGGCGGCCTCAGGCAGTCTCCTCTTCGGATATGATATTGGTATCTCAGGAGGAGTGACTTCGATGGAGCTTTTGTTGAGCAAGTTCTTCCGATCTGTGGCAAAAAAGATAAAGAATGAGTCTGGTGATGGTAACAATATGTATTGCAAATTTGAGTGCCAGATCCTCACCTTGTTCACCTCTTCCCTCTACCTTGAAGCTTTGGTGGCTTTCTTCTTTGCTTCATTAGTAACTAGGAGATTCGTCGAAAAGTCTTCATGTTTCATTGTGCTACTAATTATTGGTCGTCACTTACTCGGTTTTGGTGTTGGATTTGCTAATCAAGCTGTTCTTGTTTATCTAGCAGAGATGGCACCAGCAAAGATTAAAGGGGAACTTAACATTGGCTTTGCCATAGTCGTCACGCTTGGTATTCTAGTGGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

155

Amino Acids

16.85

Weight (kDa)

8.96

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	104 - 154	2.9e-10	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0029708)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0127501
rosa_samantha	Rh2BG335200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	15, 196
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	20, 37, 136
AgsI	TTSAA	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	3 cut(s)	109, 239, 365
AluI	AGCT	3 cut(s)	109, 239, 365
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	15, 196
AoxI	GGCC	2 cut(s)	45, 459
ApoI	RAATTY	1 cut(s)	188
AsuHPI	GGTGA	4 cut(s)	20, 176, 199, 208
AxyI	CCTNAGG	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	391
BbsI	GAAGAC	2 cut(s)	17, 285
BccI	CCATC	3 cut(s)	97, 161, 382
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	273, 380, 455
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	17, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 37, 136
Bse21I	CCTNAGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	20, 37, 136
BseMII	CTCAG	2 cut(s)	63, 99
BseRI	GAGGAG	2 cut(s)	50, 105
BshFI	GGCC	2 cut(s)	47, 461
BshNI	GGYRCC	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	20, 37, 136
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	47, 461
Bsp143I	GATC	3 cut(s)	7, 131, 201
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	47, 461
BspCNI	CTCAG	2 cut(s)	62, 98
BspLI	GGNNCC	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	15, 196
BspT107I	GGYRCC	1 cut(s)	391
BssMI	GATC	3 cut(s)	7, 131, 201
Bst6I	CTCTTC	2 cut(s)	68, 226
BstDEI	CTNAG	2 cut(s)	49, 85
BstKTI	GATC	3 cut(s)	10, 134, 204
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	7, 131, 201
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 362, 389
BstV2I	GAAGAC	2 cut(s)	17, 285
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	47, 461
BveI	ACCTGC	1 cut(s)	39
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	7 cut(s)	47, 109, 239, 248, 365, 426, 461
CviKI_1	RGCY	7 cut(s)	47, 109, 239, 248, 365, 426, 461
DdeI	CTNAG	2 cut(s)	49, 85
DpnI	GATC	3 cut(s)	9, 133, 203
DpnII	GATC	3 cut(s)	7, 131, 201
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	68, 226
EarI	CTCTTC	2 cut(s)	68, 226
Eco81I	CCTNAGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	300
FaiI	YATR	5 cut(s)	36, 72, 179, 298, 434
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 399, 431
FatI	CATG	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	273, 380, 455
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	47, 461
Hin1II	CATG	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	158, 279
HphI	GGTGA	4 cut(s)	20, 176, 199, 208
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	68, 131
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	34, 186
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 362, 389
HpyF3I	CTNAG	2 cut(s)	49, 85
Hsp92II	CATG	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	7, 131, 201
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	36, 44, 72, 147, 212, 408
MaeI	CTAG	3 cut(s)	273, 380, 455
MaeIII	GTNAC	5 cut(s)	94, 170, 268, 326, 439
MalI	GATC	3 cut(s)	9, 133, 203
MboI	GATC	3 cut(s)	7, 131, 201
MboII	GAAGA	6 cut(s)	17, 55, 118, 213, 244, 285
MflI	RGATCY	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	3 cut(s)	188, 315, 463
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	7 cut(s)	24, 58, 71, 83, 215, 229, 236
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	3 cut(s)	405, 417, 466
Msp20I	TGGCCA	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	245, 362, 389
NdeII	GATC	3 cut(s)	7, 131, 201
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	3 cut(s)	94, 326, 439
PaqCI	CACCTGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	405, 417, 466
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	7, 131, 201
SchI	GAGTC	1 cut(s)	167
SetI	ASST	7 cut(s)	33, 111, 212, 221, 234, 241, 367
Sse9I	AATT	3 cut(s)	188, 315, 463
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	273, 380, 455
TaqI	TCGA	2 cut(s)	101, 285
TasI	AATT	3 cut(s)	188, 315, 463
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	3 cut(s)	405, 417, 466
Tru9I	TTAA	3 cut(s)	405, 417, 466
TseFI	GTSAC	3 cut(s)	94, 326, 439
Tsp45I	GTSAC	3 cut(s)	94, 326, 439
TspDTI	ATGAA	4 cut(s)	17, 252, 285, 292
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	3 cut(s)	273, 380, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.