Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029730

Physical Location & Seq

Genomic Coordinates Reverse (-)

50684498 .. 50684782

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGATGGCAAGCAAAGTGAAAGATGTGTCCCCTCACGAGTTTGTCAAGGCCTACGCTGCTCATCTTAAACAATCCGGCAAGATTGAGCTTCCTGAATGGACCGATATCGTGAAGACTGCTACATTTAAGGAGCTAGCTCCTTATGACCCTGATTGGTATTATATCAGAGCTACATCTATGGCAAGGAAAATCTACTCGAGGGGTGGTCTTGGTGTTGGTGCCTTCCGTAGGATCTATGGAGGAAGCAAGAGGAACGGAAGCCGCCCACCACACTATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

9.89

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	6 - 93	4.4e-38	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0133791
rosa_samantha	Rh2BG372600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	278
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	231, 278
AluBI	AGCT	4 cut(s)	91, 136, 140, 173
AluI	AGCT	4 cut(s)	91, 136, 140, 173
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	102
AsuNHI	GCTAGC	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	60, 265
BlsI	GCNGC	2 cut(s)	61, 266
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 278
BseLI	CCNNNNNNNGG	2 cut(s)	231, 278
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	231, 278
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	221
BssMI	GATC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	13, 138
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	13, 138
Cfr13I	GGNCC	1 cut(s)	102
CviJI	RGCY	6 cut(s)	53, 91, 136, 140, 173, 264
CviKI_1	RGCY	6 cut(s)	53, 91, 136, 140, 173, 264
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	109
FaiI	YATR	5 cut(s)	147, 165, 182, 240, 279
FaqI	GGGAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	60, 265
Fsp4HI	GCNGC	2 cut(s)	60, 265
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	2 cut(s)	60, 265
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	78
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	3 cut(s)	38, 95, 112
HpyAV	CCTTC	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	133, 145
LpnPI	CCDG	3 cut(s)	91, 108, 165
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	137
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	234
MnlI	CCTC	4 cut(s)	45, 195, 236, 246
MseI	TTAA	2 cut(s)	69, 129
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	234
NheI	GCTAGC	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	61, 266
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	102
PspXI	VCTCGAGB	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	69, 129
SatI	GCNGC	2 cut(s)	60, 265
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	102
SetI	ASST	4 cut(s)	93, 138, 142, 175
Sfr274I	CTCGAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	200
TaqII	GACCGA	1 cut(s)	119
TauI	GCSGC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	69, 129
Tru9I	TTAA	2 cut(s)	69, 129
TseI	GCWGC	1 cut(s)	59
TspGWI	ACGGA	2 cut(s)	218, 273
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	102
XagI	CCTNNNNNAGG	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.