Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029760

Physical Location & Seq

Genomic Coordinates Forward (+)

71160293 .. 71160559

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAAAATCGGCGCGGCCACCGTGCTCGATGGTGTCCACCTCGAAGACAGCATCGCTGTCAATGGCACCTGCCTCACCGTCACGAAATTCGACGATTCTCATTTCACCGTCGGTCTGGTGCAGGAGACGTTGCAGAAAGACCTCGCTGGTGGAGCTCGAGCCGGGTTCGCTGGTCAATCTGGAGCGGGCGGTGCTGCCGACGAGCCGGATTCACTGTGGATCAAGGTGAAGACAACGAAGGAAATACTCAAGTATGTGGTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004746 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009231 GO:0009987 GO:0016740 GO:0016765 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Lum_binding

Protein Analysis

88

Amino Acids

9.13

Weight (kDa)

5.13

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lum_binding	PF00677	12 - 53	2.3e-10	Lumazine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0153941
rosa_rugosa	Rorug02G0302100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AccB1I	GGYRCC	2 cut(s)	65, 259
AccBSI	CCGCTC	1 cut(s)	185
AccII	CGCG	1 cut(s)	14
AciI	CCGC	3 cut(s)	14, 185, 189
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	86
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw21I	GWGCWC	2 cut(s)	27, 157
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	67, 97, 238
AvaI	CYCGRG	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	65, 259
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	2 cut(s)	51, 236
Bbv12I	GWGCWC	2 cut(s)	27, 157
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	15, 195
BlsI	GCNGC	2 cut(s)	16, 196
Bme1390I	CCNGG	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	67, 261
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	51, 236
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	2 cut(s)	65, 259
BsiHKAI	GWGCWC	2 cut(s)	27, 157
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	162, 206
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	27, 157
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	3 cut(s)	14, 185, 189
BspANI	GGCC	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	67, 261
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	2 cut(s)	65, 259
BsrBI	CCGCTC	1 cut(s)	185
BssMI	GATC	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	22, 79, 109, 216
BstC8I	GCNNGC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 167, 191
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	2 cut(s)	51, 236
BsuRI	GGCC	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	14
CviJI	RGCY	4 cut(s)	17, 155, 161, 205
CviKI_1	RGCY	4 cut(s)	17, 155, 161, 205
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	119
FaiI	YATR	2 cut(s)	255, 265
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	15, 195
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	15, 195
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	15, 195
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	162, 206
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	2 cut(s)	95, 209
HpaII	CCGG	2 cut(s)	162, 206
HphI	GGTGA	3 cut(s)	67, 97, 238
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	82, 180
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	3 cut(s)	95, 113, 203
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	4 cut(s)	22, 79, 109, 216
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	121, 133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 167, 191
HpySE526I	ACGT	1 cut(s)	128
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	152, 182
LpnPI	CCDG	8 cut(s)	82, 101, 107, 132, 156, 165, 175, 219
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	221
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	1 cut(s)	219
MboII	GAAGA	2 cut(s)	56, 241
MhlI	GDGCHC	2 cut(s)	27, 157
MluCI	AATT	1 cut(s)	86
MnlI	CCTC	3 cut(s)	50, 83, 152
MspI	CCGG	2 cut(s)	162, 206
MspR9I	CCNGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	152, 167, 191
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	67, 261
NmuCI	GTSAC	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	95, 209
PkrI	GCNGC	2 cut(s)	16, 196
Psp124BI	GAGCTC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	67, 261
PspXI	VCTCGAGB	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	157
SatI	GCNGC	2 cut(s)	15, 195
Sau3AI	GATC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	27, 157
SetI	ASST	6 cut(s)	42, 71, 131, 144, 157, 228
SfaNI	GCATC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	156, 248
SmoI	CTYRAG	2 cut(s)	156, 248
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	14, 185, 189
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	4 cut(s)	22, 79, 109, 216
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	4 cut(s)	27, 42, 90, 157
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	95, 209
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.