Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029493

Physical Location & Seq

Genomic Coordinates Reverse (-)

6970655 .. 6970870

Gene Structure 216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGACGGCTTGCTCAACTCGTGCTACGCCGAAGAGAGAGTCATGGTGTTCATGATGAACTTGAAGGACCAGGTTGACCCGAATTTCCTCAGACCGGGTCAAATCGACGTCCACATCCATTTTCCGTTGTATGATTTCACGGCGTTTCGGAACCTAGGGATGAGCTATTTAGGGGTGAAGGAGCACAACCTATCATTTTACCTCCAATCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

71

Amino Acids

8.33

Weight (kDa)

5.35

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0029493)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g23380
rosa_chinensis	RchiOBHm_Chr3g0458201

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	82
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AspA2I	CCTAGG	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	154
BauI	CACGAG	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	186
BceAI	ACGGC	2 cut(s)	22, 156
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	155
BlnI	CCTAGG	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	71, 96
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	71, 96
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	114, 165
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	154
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	114, 165
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	69, 94
Bsu15I	ATCGAT	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	114, 165
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	69
CviAII	CATG	2 cut(s)	43, 52
CviJI	RGCY	2 cut(s)	9, 165
CviKI_1	RGCY	2 cut(s)	9, 165
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	46, 55
FaiI	YATR	3 cut(s)	44, 53, 132
FatI	CATG	2 cut(s)	42, 51
FokI	GGATG	2 cut(s)	101, 172
FspBI	CTAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	46, 55
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	76, 112
Hpy188I	TCNGA	2 cut(s)	92, 150
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	76, 112
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	58, 172
HpyCH4IV	ACGT	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	46, 55
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	56, 83, 108
MabI	ACCWGGT	1 cut(s)	69
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	108
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	2 cut(s)	98, 212
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	71, 96
MvaI	CCWGG	1 cut(s)	71
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	46, 55
NlaIV	GGNNCC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	71, 96
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	6 cut(s)	75, 111, 156, 167, 192, 204
SexAI	ACCWGGT	1 cut(s)	69
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	69, 94
StyI	CCWWGG	1 cut(s)	154
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	105, 209
TasI	AATT	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	40, 71
TspGWI	ACGGA	1 cut(s)	114
Tth111I	GACNNNGTC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.