Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029956

Physical Location & Seq

Genomic Coordinates Forward (+)

9494483 .. 9495624

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAGCAGGAGGAAGAGCGCCTTCTAGCCCATGTACAAGAATACCCTTCTGATCATTCTCAATATGATCCTCTTCCTTCAATTCTTGTCAAATATCTTTACATAGGCCACTTTTTGGCCAGATGGGGTGCCAGAATGTGGGAATTCTCTGTTGGTTTATACATGATAAATGTATGGCCAGAGTCTCTACTCTTTGCTGCTACATATGGTGTGGTGGAATCAGCCTCTACTGCGCTTTTTGGACCTTTGGTCGGACGGTGGGTGGATAGATTCTCATATGTAAAGGTAGGCTTATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

100

Amino Acids

11.64

Weight (kDa)

6.26

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPN1	PF06963	31 - 96	7.8e-25	Ferroportin1 (FPN1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461431
rosa_roxburghii	Rroxscaffold_6G00418320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccB7I	CCANNNNNTGG	2 cut(s)	115, 138
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	2 cut(s)	117, 176
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	115, 138, 251
AgsI	TTSAA	1 cut(s)	81
AhdI	GACNNNNNGTC	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	3 cut(s)	106, 117, 176
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	21, 235
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	2 cut(s)	119, 178
BanI	GGYRCC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 138, 251
BseLI	CCNNNNNNNGG	3 cut(s)	115, 138, 251
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	3 cut(s)	108, 119, 178
BshNI	GGYRCC	1 cut(s)	128
BslI	CCNNNNNNNGG	3 cut(s)	115, 138, 251
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	108, 119, 178
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	52, 67
BspANI	GGCC	3 cut(s)	108, 119, 178
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	34
BssMI	GATC	2 cut(s)	52, 67
Bst4CI	ACNGT	1 cut(s)	258
Bst6I	CTCTTC	2 cut(s)	9, 78
BstAUI	TGTACA	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	21, 235
BstKTI	GATC	2 cut(s)	55, 70
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	52, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	108, 119, 178
CfoI	GCGC	2 cut(s)	21, 235
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	2 cut(s)	32, 163
CviJI	RGCY	6 cut(s)	29, 108, 119, 178, 224, 291
CviKI_1	RGCY	6 cut(s)	29, 108, 119, 178, 224, 291
CviQI	GTAC	1 cut(s)	35
DpnI	GATC	2 cut(s)	54, 69
DpnII	GATC	2 cut(s)	52, 67
DriI	GACNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	117, 176
Eam1104I	CTCTTC	2 cut(s)	9, 78
Eam1105I	GACNNNNNGTC	1 cut(s)	248
EarI	CTCTTC	2 cut(s)	9, 78
Eco47I	GGWCC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	35, 166
FalI	AAGNNNNNCTT	2 cut(s)	38, 275
FatI	CATG	2 cut(s)	31, 162
FauNDI	CATATG	2 cut(s)	205, 277
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	20, 234
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	3 cut(s)	108, 119, 178
HhaI	GCGC	2 cut(s)	21, 235
Hin1II	CATG	2 cut(s)	35, 166
Hin6I	GCGC	2 cut(s)	19, 233
HinP1I	GCGC	2 cut(s)	19, 233
HinfI	GANTC	3 cut(s)	182, 218, 270
Hpy188I	TCNGA	2 cut(s)	52, 254
HpyAV	CCTTC	3 cut(s)	32, 57, 87
HpyCH4III	ACNGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	35, 166
HspAI	GCGC	2 cut(s)	19, 233
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	52, 67
LguI	GCTCTTC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	133, 145, 192
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	26
MalI	GATC	2 cut(s)	54, 69
MboI	GATC	2 cut(s)	52, 67
MboII	GAAGA	2 cut(s)	26, 65
MlsI	TGGCCA	2 cut(s)	119, 178
MluCI	AATT	2 cut(s)	81, 143
MluNI	TGGCCA	2 cut(s)	119, 178
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	4, 81, 235
Mox20I	TGGCCA	2 cut(s)	119, 178
MscI	TGGCCA	2 cut(s)	119, 178
Msp20I	TGGCCA	2 cut(s)	119, 178
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeI	CATATG	2 cut(s)	205, 277
NdeII	GATC	2 cut(s)	52, 67
NlaIII	CATG	2 cut(s)	35, 166
NlaIV	GGNNCC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	218, 270
PflMI	CCANNNNNTGG	2 cut(s)	115, 138
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	9
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	52, 67
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	191
SetI	ASST	2 cut(s)	247, 288
SgeI	CNNG	9 cut(s)	20, 38, 44, 50, 98, 132, 144, 175, 191
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	81, 143
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	258
TasI	AATT	2 cut(s)	81, 143
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	218, 270
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	2 cut(s)	115, 138
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.