RchiOBHm_Chr3g0486361

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024908
Physical Location & Seq
Reverse (-)
33287229 .. 33288875
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45088

Sequence Viewer

Length: 456 bp
ATGATGGATATAATGCCATATTTTGTGCAAGCCAGGTGTATAAACATGATGCAATATGCTCCTTCAAGAATCAAGATAATTCCATGCGAACAAAACTGCACCGACACGATCATGAGACGTGAGATGGATAGACATTGTATTACCATCTGTCCAATGAAGCTTGTTAGTTGTCCTTTCTATGCAGTGGGATGGCAATTCCCAATACCACATTGTAAGCTTGAGCAGCATCATTCAGATGATCTCCATTCTCACATGCTGGTTGTTTTACAAAGTATTCATAAAGAAGCATCGATGGAAGATCTGGAAAGAAGCCTGGAGCAACTAAAAGAAGTGAGTTCTTTATATCTTAGTTGCACTTTTGTTAACTACAGTTTAAGGGCAAACACCACAAAGATCTGCTATTTGGTATTACAAGATTTAAACATAAACAGTTATAGCATTGAATATGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

151

Amino Acids

17.77

Weight (kDa)

6.14

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 26 - 76 6.8e-07 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024908)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0486361 RchiOBHm_Chr3g0486481
rosa_samantha Rh3AG274700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 66, 443
AjiI CACGTC 1 cut(s) 119
AjnI CCWGG 2 cut(s) 32, 312
AluBI AGCT 2 cut(s) 160, 217
AluI AGCT 2 cut(s) 160, 217
Alw26I GTCTC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 235
BccI CCATC 4 cut(s) 118, 152, 183, 286
BciT130I CCWGG 2 cut(s) 34, 314
BcoDI GTCTC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 367
BglII AGATCT 2 cut(s) 298, 393
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 34, 314
BmgBI CACGTC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 34, 314
BmsI GCATC 3 cut(s) 39, 235, 296
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 290
BseBI CCWGG 2 cut(s) 34, 314
BseCI ATCGAT 1 cut(s) 290
BseGI GGATG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 108, 238, 298, 393
BspDI ATCGAT 1 cut(s) 290
BspHI TCATGA 1 cut(s) 111
BssMI GATC 4 cut(s) 108, 238, 298, 393
Bst2UI CCWGG 2 cut(s) 34, 314
Bst4CI ACNGT 2 cut(s) 371, 431
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 4 cut(s) 111, 241, 301, 396
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 4 cut(s) 108, 238, 298, 393
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 2 cut(s) 34, 314
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 32, 312
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 298, 393
BstYI RGATCY 2 cut(s) 298, 393
Bsu15I ATCGAT 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 290
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 290
CviAII CATG 4 cut(s) 46, 84, 112, 253
CviJI RGCY 4 cut(s) 32, 160, 217, 312
CviKI_1 RGCY 4 cut(s) 32, 160, 217, 312
DdeI CTNAG 1 cut(s) 347
DpnI GATC 4 cut(s) 110, 240, 300, 395
DpnII GATC 4 cut(s) 108, 238, 298, 393
DraI TTTAAA 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 32, 312
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 4 cut(s) 49, 87, 115, 256
FatI CATG 4 cut(s) 45, 83, 111, 252
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 335
Hin1II CATG 4 cut(s) 49, 87, 115, 256
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 2 cut(s) 158, 215
HinfI GANTC 1 cut(s) 69
HpaI GTTAAC 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 4 cut(s) 66, 73, 112, 302
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 2 cut(s) 371, 431
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 28, 52, 99, 182, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 4 cut(s) 49, 87, 115, 256
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 108, 238, 298, 393
LmnI GCTCC 2 cut(s) 64, 316
LpnPI CCDG 6 cut(s) 19, 46, 242, 287, 299, 326
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 3 cut(s) 39, 235, 296
MaeII ACGT 1 cut(s) 118
MalI GATC 4 cut(s) 110, 240, 300, 395
MboI GATC 4 cut(s) 108, 238, 298, 393
MboII GAAGA 1 cut(s) 308
MflI RGATCY 2 cut(s) 298, 393
MluCI AATT 2 cut(s) 78, 194
MseI TTAA 3 cut(s) 363, 374, 419
MslI CAYNNNNRTG 2 cut(s) 110, 234
MspR9I CCNGG 2 cut(s) 34, 314
MvaI CCWGG 2 cut(s) 34, 314
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 4 cut(s) 108, 238, 298, 393
NlaIII CATG 4 cut(s) 49, 87, 115, 256
NspI RCATGY 1 cut(s) 256
PagI TCATGA 1 cut(s) 111
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 32, 312
PspGI CCWGG 2 cut(s) 32, 312
PsuI RGATCY 2 cut(s) 298, 393
RseI CAYNNNNRTG 2 cut(s) 110, 234
SaqAI TTAA 3 cut(s) 363, 374, 419
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 4 cut(s) 108, 238, 298, 393
ScrFI CCNGG 2 cut(s) 34, 314
SetI ASST 4 cut(s) 38, 121, 162, 219
SfaNI GCATC 3 cut(s) 39, 235, 296
SfcI CTRYAG 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 110, 234
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 78, 194
StyD4I CCNGG 2 cut(s) 32, 312
TaaI ACNGT 2 cut(s) 371, 431
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 290
TasI AATT 2 cut(s) 78, 194
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 3 cut(s) 363, 374, 419
Tru9I TTAA 3 cut(s) 363, 374, 419
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 170, 266
TspRI CASTG 1 cut(s) 189
XceI RCATGY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.