RchiOBHm_Chr3g0494331

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024693
Physical Location & Seq
Reverse (-)
43032810 .. 43034507
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45687

Sequence Viewer

Length: 918 bp
ATGGAACACAGTTTAGGTCAAGACTCTATTCCTGGGTTTGGGTCATTTGATAAGTCTAGGGTTTTGGATGTAAGGCCTTTGAGGCGTCTTGTTCCTGTATTCCCCTCAGCTTCTAGTAATTCTTCATTTTCAACACCCCAAGGTGCCGCTTCTTTTGTTTGTGCTTCTCCTGCTGGTCCTTTCCCACCCGGGGTTTCCCCATTTTCCCCCTTTTTCATTTCATCAGAGTCTCACAGGCCGCTCGAACAAAATCTTCAAACACCAAGTAGTATACCCAATGAGAATCAACCGTTTGGCTTCAGTAATTCAGTATCTAATGCAATTCCAATAAATTCCTTTAGGAATCCTCCTCCACCCTCAACAGCTGGGGTAACCCCCAACCAGAGTACAGGAACTTCGAATGGAGGAGATACTACACCTTCGAGAAGGATTACTAGAAGTCGTGTCCAACCACAACCACAACGTGGGGTTGCGGAGGAAGATGGTTTTAGTGAGAGCGTTGTTGATGCAGAAAATACAAGGAAGGTCGGGAGGCCAAAGGGTAAGTTTCAGTCTCAAAAGAGGACACGGGGTGGCCAGGACATTAATGTTGCCTTGCCTGATGTTGACATTGATGCAATAGTTGATAATGTTCTCACCTCATATACCAATACCTTGAGACAAACTGATGGCAACAAGGAATCAGTTGGATATGCACTCATGTGTTATGATCTGCTACGAAGAAAGATTTCACAAATTAAAGAGATGAAGGAGGGGATACCAGGAGTGTCAAGAACAGGGCGCTCTGATCTAAGGGCTGGAACTCTCTTCATGAATAAGGGAGTTAGGACAAATGCCCAAAAGAGGATTGGTACAGTGCCCGGTGTTGAAGTTGGGGATATTTTCTTTTTCCGAATGGAATTGTGCTTGGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211
Pfam Domains
Protein Families
AT_hook Pre-SET SAD_SRA SET

Protein Analysis

305

Amino Acids

32.96

Weight (kDa)

9.54

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024693)

Species Orthologous Gene IDs
pyrus_communis pycom14g08770
rosa_chinensis RchiOBHm_Chr3g0494331
rosa_samantha Rh3AG314900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 464
AccBSI CCGCTC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 271
AciI CCGC 3 cut(s) 147, 239, 473
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 85
AdeI CACNNNGTG 2 cut(s) 464, 572
AfaI GTAC 2 cut(s) 388, 853
AfiI CCNNNNNNNGG 4 cut(s) 38, 190, 464, 843
AgsI TTSAA 3 cut(s) 132, 257, 869
AjnI CCWGG 3 cut(s) 31, 576, 760
AleI CACNNNNGTG 1 cut(s) 700
AluBI AGCT 2 cut(s) 110, 365
AluI AGCT 2 cut(s) 110, 365
Alw26I GTCTC 3 cut(s) 234, 558, 652
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 4 cut(s) 74, 236, 533, 574
ApoI RAATTY 1 cut(s) 331
AseI ATTAAT 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 727
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 3 cut(s) 189, 190, 861
AsuHPI GGTGA 1 cut(s) 628
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 861
BalI TGGCCA 1 cut(s) 576
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BbvCI CCTCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 476, 662
BciT130I CCWGG 3 cut(s) 33, 578, 762
BciVI GTATCC 1 cut(s) 750
BcnI CCSGG 3 cut(s) 189, 190, 861
BcoDI GTCTC 3 cut(s) 234, 558, 652
BfaI CTAG 3 cut(s) 57, 114, 435
BfoI RGCGCY 1 cut(s) 784
BfuI GTATCC 1 cut(s) 750
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 2 cut(s) 147, 239
BlsI GCNGC 2 cut(s) 148, 240
Bme1390I CCNGG 6 cut(s) 33, 189, 190, 578, 762, 861
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 6 cut(s) 33, 189, 190, 578, 762, 861
BmsI GCATC 2 cut(s) 496, 604
Bpu10I CCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 676
BpuMI CCSGG 3 cut(s) 189, 190, 861
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 4 cut(s) 32, 139, 188, 189
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 190, 464, 843
BseBI CCWGG 3 cut(s) 33, 578, 762
BseDI CCNNGG 4 cut(s) 32, 139, 188, 189
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 38, 190, 464, 843
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 339, 420
BseSI GKGCMC 1 cut(s) 861
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 4 cut(s) 76, 238, 535, 576
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 189, 861
BslI CCNNNNNNNGG 4 cut(s) 38, 190, 464, 843
BsmAI GTCTC 3 cut(s) 234, 558, 652
BsnI GGCC 4 cut(s) 76, 238, 535, 576
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 861
Bsp143I GATC 2 cut(s) 709, 787
BspACI CCGC 3 cut(s) 147, 239, 473
BspANI GGCC 4 cut(s) 76, 238, 535, 576
BspCNI CTCAG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 810
BspLI GGNNCC 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 241
BssECI CCNNGG 4 cut(s) 32, 139, 188, 189
BssMI GATC 2 cut(s) 709, 787
BssNAI GTATAC 1 cut(s) 272
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 272
Bst2UI CCWGG 3 cut(s) 33, 578, 762
Bst4CI ACNGT 3 cut(s) 11, 291, 856
Bst6I CTCTTC 1 cut(s) 812
BstACI GRCGYC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 106, 791
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 2 cut(s) 712, 790
BstMAI GTCTC 3 cut(s) 234, 558, 652
BstMBI GATC 2 cut(s) 709, 787
BstMWI GCNNNNNNNGC 2 cut(s) 82, 170
BstNI CCWGG 3 cut(s) 33, 578, 762
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 6 cut(s) 31, 187, 188, 576, 760, 859
BstSLI GKGCMC 1 cut(s) 861
BstZ17I GTATAC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 4 cut(s) 76, 238, 535, 576
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 861
CciI TCATGA 1 cut(s) 810
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 176
Cfr9I CCCGGG 1 cut(s) 188
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 387, 852
CviAII CATG 2 cut(s) 700, 811
CviJI RGCY 8 cut(s) 76, 110, 238, 297, 365, 535, 576, 797
CviKI_1 RGCY 8 cut(s) 76, 110, 238, 297, 365, 535, 576, 797
CviQI GTAC 2 cut(s) 387, 852
DdeI CTNAG 2 cut(s) 106, 791
DpnI GATC 2 cut(s) 711, 789
DpnII GATC 2 cut(s) 709, 787
DraIII CACNNNGTG 2 cut(s) 464, 572
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 3 cut(s) 31, 576, 760
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 703, 814
FaiI YATR 7 cut(s) 272, 643, 645, 693, 701, 708, 812
FatI CATG 2 cut(s) 699, 810
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 147, 239
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 147, 239
FspBI CTAG 3 cut(s) 57, 114, 435
GlaI GCGC 1 cut(s) 782
GluI GCNGC 2 cut(s) 147, 239
GsaI CCCAGC 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 4 cut(s) 76, 238, 535, 576
HapII CCGG 2 cut(s) 189, 861
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 783
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 2 cut(s) 703, 814
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 5 cut(s) 23, 227, 283, 343, 680
HpaII CCGG 2 cut(s) 189, 861
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 2 cut(s) 272, 607
Hpy188I TCNGA 3 cut(s) 226, 787, 893
Hpy188III TCNNGA 5 cut(s) 20, 423, 529, 771, 811
Hpy8I GTNNAC 2 cut(s) 272, 607
HpyAV CCTTC 4 cut(s) 420, 429, 517, 742
HpyCH4III ACNGT 3 cut(s) 11, 291, 856
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 4 cut(s) 320, 509, 617, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 170
HpyF3I CTNAG 2 cut(s) 106, 791
HpySE526I ACGT 1 cut(s) 463
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 2 cut(s) 703, 814
HspAI GCGC 1 cut(s) 781
Kzo9I GATC 2 cut(s) 709, 787
LweI GCATC 2 cut(s) 496, 604
MaeI CTAG 3 cut(s) 57, 114, 435
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 711, 789
MbiI CCGCTC 1 cut(s) 241
MboI GATC 2 cut(s) 709, 787
MboII GAAGA 5 cut(s) 114, 245, 491, 732, 799
MhlI GDGCHC 1 cut(s) 861
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 6 cut(s) 118, 304, 321, 331, 735, 899
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 2 cut(s) 17, 236
MmeI TCCRAC 3 cut(s) 472, 667, 892
Mox20I TGGCCA 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 727
MscI TGGCCA 1 cut(s) 576
MseI TTAA 2 cut(s) 585, 738
MslI CAYNNNNRTG 1 cut(s) 700
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 2 cut(s) 189, 861
MspR9I CCNGG 6 cut(s) 33, 189, 190, 578, 762, 861
MvaI CCWGG 3 cut(s) 33, 578, 762
MwoI GCNNNNNNNGC 2 cut(s) 82, 170
NciI CCSGG 3 cut(s) 189, 190, 861
NdeII GATC 2 cut(s) 709, 787
NlaIII CATG 2 cut(s) 703, 814
NlaIV GGNNCC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 700
PagI TCATGA 1 cut(s) 810
PceI AGGCCT 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 727
PfeI GAWTC 3 cut(s) 283, 343, 680
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 2 cut(s) 148, 240
PleI GAGTC 2 cut(s) 17, 235
PpsI GAGTC 2 cut(s) 17, 235
PshBI ATTAAT 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 31, 576, 760
PspEI GGTNACC 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 3 cut(s) 31, 576, 760
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 388, 853
RsaNI GTAC 2 cut(s) 387, 852
RseI CAYNNNNRTG 1 cut(s) 700
SaqAI TTAA 2 cut(s) 585, 738
SatI GCNGC 2 cut(s) 147, 239
Sau3AI GATC 2 cut(s) 709, 787
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 17, 236
ScrFI CCNGG 6 cut(s) 33, 189, 190, 578, 762, 861
SduI GDGCHC 1 cut(s) 861
SetI ASST 9 cut(s) 19, 112, 145, 367, 421, 466, 528, 641, 656
SfaNI GCATC 2 cut(s) 496, 604
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 1 cut(s) 176
SmaI CCCGGG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 6 cut(s) 118, 304, 321, 331, 735, 899
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 3 cut(s) 147, 239, 473
SspMI CTAG 3 cut(s) 57, 114, 435
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 6 cut(s) 31, 187, 188, 576, 760, 859
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 3 cut(s) 11, 291, 856
TaiI ACGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 243, 398, 422
TasI AATT 6 cut(s) 118, 304, 321, 331, 735, 899
TatI WGTACW 1 cut(s) 386
TauI GCSGC 2 cut(s) 149, 241
TfiI GAWTC 3 cut(s) 283, 343, 680
Tru1I TTAA 2 cut(s) 585, 738
Tru9I TTAA 2 cut(s) 585, 738
TscAI CASTG 1 cut(s) 861
TspDTI ATGAA 6 cut(s) 114, 205, 210, 761, 799, 827
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 1 cut(s) 861
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 176
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 3 cut(s) 57, 114, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.