Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030035

Physical Location & Seq

Genomic Coordinates Reverse (-)

65850319 .. 65851766

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTTGCATGTTCTTTAGTTGTGAAGGAGTTCTTTTGGTTGAATGTTAATTTGGCTTTATATAGTTGTTGGATTTTGTTTTTTGATGAACTGGGAATCTGTAATGACTTTTTCTTGCTCAGATTCCCCACTATTTTTACTGAATCTTTCTTGGGTTTAGATGGGTCTCTTCTGTTACTTGAACGAGTGAAGAACCTTGTGCTGCCAGCTGCCCTAGAAGCAGAATCCACATGGACAGAAAAATTTGGTTTTACAAAGACAGATCCGGACCAGGGGGTTCAAAATTTCAGATTCAAATTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

101

Amino Acids

11.79

Weight (kDa)

4.61

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IDM1_C	PF23209	60 - 92	3.6e-07	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030035)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0445401
rosa_samantha	Rh4DG430500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	265
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	242, 283
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	43, 182, 281, 295
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	202, 209
ApoI	RAATTY	2 cut(s)	242, 283
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	189, 196
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	203, 210
BlsI	GCNGC	2 cut(s)	204, 211
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	189, 196
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	265
BspPI	GGATC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	189, 196
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	2 cut(s)	9, 231
CviJI	RGCY	2 cut(s)	56, 209
CviKI_1	RGCY	2 cut(s)	56, 209
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	12, 234
FaiI	YATR	5 cut(s)	10, 61, 63, 232, 301
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	2 cut(s)	8, 230
Fnu4HI	GCNGC	2 cut(s)	203, 210
Fsp4HI	GCNGC	2 cut(s)	203, 210
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	2 cut(s)	203, 210
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	12, 234
HinfI	GANTC	5 cut(s)	96, 123, 143, 224, 291
HpaII	CCGG	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	122, 290
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	12, 234
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	77, 219, 257, 279, 284
Lsp1109I	GCAGC	2 cut(s)	189, 196
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	161, 202
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	4 cut(s)	49, 242, 283, 296
MmeI	TCCRAC	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	12, 234
NspI	RCATGY	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	5 cut(s)	96, 123, 143, 224, 291
PkrI	GCNGC	2 cut(s)	204, 211
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	203, 210
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	2 cut(s)	198, 211
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	4 cut(s)	49, 242, 283, 296
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	270
TasI	AATT	4 cut(s)	49, 242, 283, 296
TfiI	GAWTC	5 cut(s)	96, 123, 143, 224, 291
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	2 cut(s)	202, 209
TspDTI	ATGAA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	242, 283
XceI	RCATGY	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.