Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030021

Physical Location & Seq

Genomic Coordinates Reverse (-)

66438878 .. 66439779

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAACTTCCTTGATGAAGAATTGCTAGCTGATCCAACCCTTCATTTTGAAAATTTGAAGGTTCTCATTCTTGCAAACTGTAGGCTCATGGGTTCAATACCCCAATGGTTGAGTAGTAGTAGCAATCTGCAGTTGCTGGATTTATCTTGGAACCGCTTGGAAGGAACAATCCCAGTCTGGTTTGGTGGTTTTAGGCATCTCTTCTACCTGGACGTATCAAACAATTCTCTCACTGGGGATATTCCTAGAAGCATAACTGGACTACGGAGCCTCATTGATTGGAATTATTCTTCAGTTCAAGAAACTTCCCCCGATTTTCCTCTTTTCATGAAAAAGAATGCAAGTGCAAGAGGATTGCAGTATAATCAAGTTTGGAGGTTCCCACCTACATTGGAATTTCGCAACAATGAGCTTAGCGGACCAATCTGGCCAGAGTTTGGGAACCTGAAATCACTTCATGTTTTGGATCTTGGATTCAACAGTCTATCGGGACCAATTCCAAGTACTCTATCTAAGATGACCAGCTTAGAGACTCTAGATCTGTCTCATAACAAGCTCTCGGGGAGAATACCACCTTCGTTGGTTCAGCTCAGCTTTTTGTCCAAGTTTAGTATTGCAGACAACGTACCAGTTAGAGGGGTCGATCCCTACAGGAGGTCAGTTCATGACCTTTCCAAATTCCAGCTTTCAAGGGAACAATCTTTGTGGCTTCCATGTTCCCTCTCGTACGTCAGATTCCAAGCCAGAAGAACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

252

Amino Acids

28.66

Weight (kDa)

8.58

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	18 - 77	2.4e-09	Leucine rich repeat
LRR_8	PF13855	41 - 91	1.9e-08	Leucine rich repeat
LRR_8	PF13855	146 - 186	2.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0446171
rosa_samantha	Rh4DG438000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	2 cut(s)	154, 417
AclWI	GGATC	3 cut(s)	26, 474, 638
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	3 cut(s)	52, 395, 677
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	3 cut(s)	505, 627, 728
AfiI	CCNNNNNNNGG	3 cut(s)	437, 635, 654
AgsI	TTSAA	6 cut(s)	50, 58, 96, 299, 478, 690
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	7 cut(s)	29, 412, 525, 556, 589, 594, 685
AluI	AGCT	7 cut(s)	29, 412, 525, 556, 589, 594, 685
Alw26I	GTCTC	2 cut(s)	524, 549
AlwI	GGATC	3 cut(s)	26, 474, 638
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	1 cut(s)	428
ApoI	RAATTY	3 cut(s)	52, 395, 677
AspS9I	GGNCC	2 cut(s)	419, 491
AsuNHI	GCTAGC	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	2 cut(s)	419, 491
BalI	TGGCCA	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	524, 549
BfaI	CTAG	3 cut(s)	26, 246, 536
BfmI	CTRYAG	3 cut(s)	79, 128, 649
BglII	AGATCT	1 cut(s)	538
BlpI	GCTNAGC	2 cut(s)	413, 590
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	419, 491
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	419, 491
BmiI	GGNNCC	5 cut(s)	152, 269, 380, 443, 492
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	2 cut(s)	167, 243
BmsI	GCATC	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	29
BmuI	ACTGGG	2 cut(s)	167, 243
Bpu1102I	GCTNAGC	2 cut(s)	413, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 635, 654
Bse1I	ACTGG	5 cut(s)	173, 238, 262, 629, 757
BseBI	CCWGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	3 cut(s)	437, 635, 654
BseMII	CTCAG	1 cut(s)	604
BseNI	ACTGG	5 cut(s)	173, 238, 262, 629, 757
BshFI	GGCC	1 cut(s)	430
BsiHKCI	CYCGRG	1 cut(s)	559
BsiWI	CGTACG	1 cut(s)	726
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	437, 635, 654
BsmAI	GTCTC	2 cut(s)	524, 549
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	31, 466, 538, 643
Bsp1720I	GCTNAGC	2 cut(s)	413, 590
BspACI	CCGC	2 cut(s)	154, 417
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	1 cut(s)	603
BspHI	TCATGA	2 cut(s)	327, 664
BspLI	GGNNCC	5 cut(s)	152, 269, 380, 443, 492
BspMAI	CTGCAG	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	3 cut(s)	26, 474, 638
BsrI	ACTGG	5 cut(s)	173, 238, 262, 629, 757
BssMI	GATC	4 cut(s)	31, 466, 538, 643
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	80, 482
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	413, 513, 526, 590
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstKTI	GATC	4 cut(s)	34, 469, 541, 646
BstMAI	GTCTC	2 cut(s)	524, 549
BstMBI	GATC	4 cut(s)	31, 466, 538, 643
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	3 cut(s)	79, 128, 649
BstX2I	RGATCY	2 cut(s)	466, 538
BstYI	RGATCY	2 cut(s)	466, 538
BsuRI	GGCC	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	2 cut(s)	327, 664
Cfr13I	GGNCC	2 cut(s)	419, 491
Csp6I	GTAC	3 cut(s)	504, 626, 727
CspCI	CAANNNNNGTGG	6 cut(s)	372, 407, 561, 596, 686, 721
CviAII	CATG	5 cut(s)	88, 328, 458, 665, 714
CviQI	GTAC	3 cut(s)	504, 626, 727
DdeI	CTNAG	4 cut(s)	413, 513, 526, 590
DpnI	GATC	4 cut(s)	33, 468, 540, 645
DpnII	GATC	4 cut(s)	31, 466, 538, 643
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	419, 491
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	5 cut(s)	91, 331, 461, 668, 717
FaiI	YATR	8 cut(s)	89, 254, 329, 363, 459, 549, 666, 715
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	5 cut(s)	87, 327, 457, 664, 713
FspBI	CTAG	3 cut(s)	26, 246, 536
HaeIII	GGCC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	91, 331, 461, 668, 717
HinfI	GANTC	3 cut(s)	474, 532, 735
Hpy188I	TCNGA	1 cut(s)	734
Hpy188III	TCNNGA	5 cut(s)	299, 328, 489, 536, 665
HpyAV	CCTTC	4 cut(s)	50, 52, 155, 585
HpyCH4III	ACNGT	2 cut(s)	80, 482
HpyCH4IV	ACGT	3 cut(s)	213, 624, 729
HpyCH4V	TGCA	6 cut(s)	74, 130, 341, 347, 358, 617
HpyF3I	CTNAG	4 cut(s)	413, 513, 526, 590
HpySE526I	ACGT	3 cut(s)	213, 624, 729
Hsp92II	CATG	5 cut(s)	91, 331, 461, 668, 717
Kzo9I	GATC	4 cut(s)	31, 466, 538, 643
LmnI	GCTCC	1 cut(s)	267
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	3 cut(s)	26, 246, 536
MaeII	ACGT	3 cut(s)	213, 624, 729
MalI	GATC	4 cut(s)	33, 468, 540, 645
MboI	GATC	4 cut(s)	31, 466, 538, 643
MboII	GAAGA	4 cut(s)	29, 193, 282, 759
MflI	RGATCY	2 cut(s)	466, 538
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	7 cut(s)	20, 52, 223, 283, 395, 495, 677
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	7 cut(s)	281, 330, 344, 369, 629, 648, 731
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
Msp20I	TGGCCA	1 cut(s)	430
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	209
NdeII	GATC	4 cut(s)	31, 466, 538, 643
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	5 cut(s)	91, 331, 461, 668, 717
NlaIV	GGNNCC	5 cut(s)	152, 269, 380, 443, 492
PagI	TCATGA	2 cut(s)	327, 664
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	474, 735
Pfl23II	CGTACG	1 cut(s)	726
PflMI	CCANNNNNTGG	1 cut(s)	437
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspLI	CGTACG	1 cut(s)	726
PspN4I	GGNNCC	5 cut(s)	152, 269, 380, 443, 492
PspPI	GGNCC	2 cut(s)	419, 491
PstI	CTGCAG	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	466, 538
RsaI	GTAC	3 cut(s)	505, 627, 728
RsaNI	GTAC	3 cut(s)	504, 626, 727
Sau3AI	GATC	4 cut(s)	31, 466, 538, 643
Sau96I	GGNCC	2 cut(s)	419, 491
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	3 cut(s)	79, 128, 649
SinI	GGWCC	2 cut(s)	419, 491
Sse9I	AATT	7 cut(s)	20, 52, 223, 283, 395, 495, 677
SsiI	CCGC	2 cut(s)	154, 417
SspMI	CTAG	3 cut(s)	26, 246, 536
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	80, 482
TaiI	ACGT	3 cut(s)	216, 627, 732
TaqI	TCGA	1 cut(s)	642
TasI	AATT	7 cut(s)	20, 52, 223, 283, 395, 495, 677
TatI	WGTACW	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	474, 735
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	7 cut(s)	17, 30, 32, 316, 344, 446, 653
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	419, 491
XagI	CCTNNNNNAGG	1 cut(s)	652
XapI	RAATTY	3 cut(s)	52, 395, 677
XbaI	TCTAGA	1 cut(s)	535
XspI	CTAG	3 cut(s)	26, 246, 536
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.