RchiOBHm_Chr5g0002181

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025040
Physical Location & Seq
Forward (+)
1260864 .. 1264687
3824 bp
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UTR
Exon/CDS
Intron
PRQ28356

Sequence Viewer

Length: 189 bp
ATGAAGTTATTTCACAACTGGAGTTGTAGGTTTCATCCAGCATGTGTGAACATCTCAAATGAGGTAGCCAAAAAATTGGAACACTATATATGTTCAGAATGTTCAGCTGACGAGGATGTGAAAAAACCTCACAACTCTGTTCCAGCGTCACTTGCAGATGATGTCAAGGTGGACCCTAAGCGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

62

Amino Acids

7.1

Weight (kDa)

7.71

Isoelectric Point (pI)

65.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025040)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0002181
rosa_samantha Rh5AG017000 Rh5CG018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 34, 121
BseNI ACTGG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 34, 121
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 34, 121
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 135
CviAII CATG 1 cut(s) 42
CviJI RGCY 2 cut(s) 68, 107
CviKI_1 RGCY 2 cut(s) 68, 107
DdeI CTNAG 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 172
FaeI CATG 1 cut(s) 45
FaiI YATR 4 cut(s) 43, 87, 89, 91
FatI CATG 1 cut(s) 41
FokI GGATG 2 cut(s) 21, 128
GlaI GCGC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 184
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 49, 172
Hpy188I TCNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 49, 172
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 1 cut(s) 181
LpnPI CCDG 3 cut(s) 4, 51, 156
MaeIII GTNAC 1 cut(s) 147
MluCI AATT 1 cut(s) 74
MnlI CCTC 3 cut(s) 55, 106, 138
MspA1I CMGCKG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 147
NspI RCATGY 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 172
SetI ASST 5 cut(s) 32, 66, 109, 130, 171
SgeI CNNG 7 cut(s) 31, 50, 54, 124, 155, 164, 178
SinI GGWCC 1 cut(s) 172
Sse9I AATT 1 cut(s) 74
TasI AATT 1 cut(s) 74
TseFI GTSAC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 17, 23
VpaK11BI GGWCC 1 cut(s) 172
XceI RCATGY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.