RchiOBHm_Chr5g0005881

CS domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
3700088 .. 3701581
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28705

Sequence Viewer

Length: 189 bp
ATGCGGAAGATTTTTCGACGACCCATCAGGATTGAGAGCACTCTCCACTCCGTTGGAGCAACTGCTTTGGAAGCCAAGCGGGTGGCAAATGATTCAGACCAAGAAGTATCCAAGCCAGGAGAATCAGACTCTGGCAAGAGTGAAGCTGATTCCTCAGGAGAGAAAAGGGAAGCTACACCAAGCACATGA

Protein Analysis

62

Amino Acids

6.7

Weight (kDa)

6.57

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0030137)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0005881
rosa_samantha Rh5DG044800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 79
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 146, 173
AluI AGCT 2 cut(s) 146, 173
Alw21I GWGCWC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 131
AxyI CCTNAGG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 118
BfuI GTATCC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
Bse21I CCTNAGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 41
BspACI CCGC 2 cut(s) 4, 79
BspCNI CTCAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstXI CCANNNNNNTGG 2 cut(s) 53, 82
Bsu36I CCTNAGG 1 cut(s) 154
BsuI GTATCC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 131
CviAII CATG 1 cut(s) 186
CviJI RGCY 4 cut(s) 74, 115, 146, 173
CviKI_1 RGCY 4 cut(s) 74, 115, 146, 173
DdeI CTNAG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 189
FaiI YATR 1 cut(s) 187
FatI CATG 1 cut(s) 185
FauI CCCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 189
HinfI GANTC 4 cut(s) 92, 122, 128, 149
Hpy188I TCNGA 2 cut(s) 97, 127
Hpy188III TCNNGA 2 cut(s) 28, 156
Hpy99I CGWCG 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 189
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 13, 102, 117, 129, 141
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 189
PfeI GAWTC 3 cut(s) 92, 122, 149
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 131
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 41
SetI ASST 2 cut(s) 148, 175
SsiI CCGC 2 cut(s) 4, 79
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 1 cut(s) 16
TfiI GAWTC 3 cut(s) 92, 122, 149
TspGWI ACGGA 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.