Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025017

Physical Location & Seq

Genomic Coordinates Reverse (-)

16947372 .. 16947530

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGATCGGCAACGTCTACGTCCAGTTCAAGGAGGAGGACCAGGCCTTGCAAGGGAGGTTCTATAACGGCCGCCCGATTATCGCCGACTTCTCGCCGGTGACGGATTTCCGGGAAGCCACGTGTCGCCAGTTCGAGGAGAACAACTGCAATCGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

52

Amino Acids

6.12

Weight (kDa)

4.81

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025017)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0022941
rosa_samantha	Rh5CG176000 Rh5DG162700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	67
AcvI	CACGTG	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	28, 51, 133
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	42, 67
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	37
BbrPI	CACGTG	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	110
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	41, 110
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	41, 110
BpuMI	CCSGG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 51, 133
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	22, 127
BseBI	CCWGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	3 cut(s)	28, 51, 133
BseNI	ACTGG	2 cut(s)	22, 127
BseRI	GAGGAG	2 cut(s)	47, 149
BseX3I	CGGCCG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	44, 69
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	95, 109
BslI	CCNNNNNNNGG	3 cut(s)	28, 51, 133
BsnI	GGCC	2 cut(s)	44, 69
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	44, 69
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	22, 127
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	120
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 108
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	44, 69
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	37
CviJI	RGCY	3 cut(s)	44, 69, 116
CviKI_1	RGCY	3 cut(s)	44, 69, 116
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	37
Eco52I	CGGCCG	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	39
FaiI	YATR	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	44, 69
HapII	CCGG	2 cut(s)	95, 109
HpaII	CCGG	2 cut(s)	95, 109
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	16
HpyCH4IV	ACGT	3 cut(s)	12, 18, 119
HpyCH4V	TGCA	2 cut(s)	49, 147
HpySE526I	ACGT	3 cut(s)	12, 18, 119
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	6 cut(s)	26, 35, 53, 108, 122, 140
MaeII	ACGT	3 cut(s)	12, 18, 119
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MnlI	CCTC	4 cut(s)	25, 28, 48, 127
MspI	CCGG	2 cut(s)	95, 109
MspR9I	CCNGG	2 cut(s)	41, 110
MvaI	CCWGG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	3
NmuCI	GTSAC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	71
PmaCI	CACGTG	1 cut(s)	120
PmlI	CACGTG	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	37
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	41, 110
SetI	ASST	4 cut(s)	15, 21, 59, 122
SgrAI	CRCCGGYG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	37
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	39, 108
TaiI	ACGT	3 cut(s)	15, 21, 122
TaqI	TCGA	2 cut(s)	132, 151
TauI	GCSGC	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.