RchiOBHm_Chr5g0036401

UPF0548 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022768
Physical Location & Seq
Forward (+)
30588306 .. 30588910
605 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31522

Sequence Viewer

Length: 387 bp
ATGAAGCTAAGTTCAGGGGAGCCGCTGCCAAGTCCCTATCTTTCCTGCAAGAGCCAAGAAGATAACGGCCTCCCAGAAAATGGTTTCTTATGCAACCATGCGTGCGCTTTGGTTGGTTCGGGTTTGGAGACTTATAAGAAGGTCAAGAGGGCTCTTCAGGATTGGAGGCATTTTGGAATGAATTGGGATCAATCCAAAGACGCCCGTTCAAATGGAGTGAGGTTATGTGTCTGTGTCAAGGAGTTGCTGTCATTGGCCATGATGCCTCTTCAGATAGTGTATGTGAATGAAAATAAACAACAGTCCATGACCTCTTTTTGTCTTGGGGGTGGTACCTTTCAAGGTCACTTGCTGTCTCACTTCTCTTGGTTTTTGTTGTTGAGGTGA

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

8.57

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1990 PF09348 20 - 118 2e-09 Domain of unknown function (DUF1990)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022768)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0036401 RchiOBHm_Chr5g0036471
rosa_samantha Rh5AG248500 Rh5CG281900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 140, 254
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 210, 341
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw26I GTCTC 2 cut(s) 122, 360
AlwI GGATC 1 cut(s) 195
AoxI GGCC 2 cut(s) 67, 255
ApeKI GCWGC 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 122, 360
BisI GCNGC 2 cut(s) 23, 26
BlsI GCNGC 2 cut(s) 24, 27
BmiI GGNNCC 2 cut(s) 21, 334
BmsI GCATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 12
BshFI GGCC 2 cut(s) 69, 257
BshNI GGYRCC 1 cut(s) 332
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 122, 360
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 69, 257
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 69, 257
BspLI GGNNCC 2 cut(s) 21, 334
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 332
BssMI GATC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 2 cut(s) 159, 273
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 122, 360
BstMBI GATC 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 12
BsuRI GGCC 2 cut(s) 69, 257
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 107
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 333
CviAII CATG 3 cut(s) 98, 259, 307
CviJI RGCY 6 cut(s) 7, 22, 54, 69, 152, 257
CviKI_1 RGCY 6 cut(s) 7, 22, 54, 69, 152, 257
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 159, 273
EarI CTCTTC 2 cut(s) 159, 273
Eco24I GRGCYC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 140, 254
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 3 cut(s) 101, 262, 310
FaiI YATR 7 cut(s) 91, 99, 135, 226, 260, 282, 308
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 97, 258, 306
Fnu4HI GCNGC 2 cut(s) 23, 26
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 23, 26
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 23, 26
HaeIII GGCC 2 cut(s) 69, 257
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 3 cut(s) 101, 262, 310
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 145, 158
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 48, 93
HpyF3I CTNAG 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 3 cut(s) 101, 262, 310
HspAI GCGC 1 cut(s) 105
KpnI GGTACC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 187
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 58, 87, 143
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 71, 146, 260
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 7 cut(s) 80, 141, 159, 213, 276, 322, 375
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 25
NdeII GATC 1 cut(s) 187
NlaIII CATG 3 cut(s) 101, 262, 310
NlaIV GGNNCC 2 cut(s) 21, 334
NmuCI GTSAC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 159
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 24, 27
PsiI TTATAA 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 21, 334
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 159
SatI GCNGC 2 cut(s) 23, 26
Sau3AI GATC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 9, 144, 224, 314, 338, 346, 386
SfaNI GCATC 1 cut(s) 252
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 23
TaaI ACNGT 1 cut(s) 303
TasI AATT 1 cut(s) 181
TauI GCSGC 1 cut(s) 25
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 17, 194, 303
Van91I CCANNNNNTGG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.