RchiOBHm_Chr5g0056761

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0024989
Physical Location & Seq
Forward (+)
60570464 .. 60571661
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33363

Sequence Viewer

Length: 663 bp
ATGATCTTTGATCAGGCACCATTGTACCATCGGCAAGCAAAAATGGCAATGAAGTTAACTAAGGAAGAAGCCATGCCGGCGCCAGGAAAGCTTGAAAGCCTAACCTTACAACACCAACTGGTCAGATGCTTAAGTAACAGCTTTTACATCCGTAACTTGGTGTCTAAGCAACGGAGGAGAATGCTTGTTGCTGGCTATGATCTTGACATGTCTTACATCACCGACCGCATATTGGCAATGTCGTTCCGTGCAGAGCGGATGCGTGCAATGTATCGAAATAATCTCTGGCAGGTCAAGTCTGTGCTTGATATGAGGCATCCAGAACATTACAAGATCTATAACCTCTGCATTGAAGAGCATTACTCTCCATCGCATTTCTATGGCCGTGTGGAGAGGTATCCTTTTGATGATAACCATGTTCCACCTCTTGAAATGGTCAAGCTTTTCTGCGAAAGTGTGCAATCATGGCTCAAGAGTGACCCGGAAAACATTGCTGTTATACACTGCATGGCAGGCAAAGGTCGAACAGGCTTAATGGTAAGCGCGTATCTGGTCTACCGTGGGATGTCAGCAGAGGAAGCACTTCAACTCTATGCTCATAGACGAACCACCAATAATGAAGGAGTAAGTCACGTCACATTAGGTATATATAATACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

220

Amino Acids

25.74

Weight (kDa)

9.11

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTP-NADK PF22741 98 - 202 4.2e-10 DSP-PTPase phosphatase fused to NAD+ Kinase
Tc-R-P PF22785 130 - 188 1.3e-09 Polymorphic toxin system, DSP-PTPase phosphatase
PTP-SAK PF22784 133 - 196 1.3e-09 Swiss Army Knife protein, DSP-PTPase phosphatase domain
DSPc PF00782 136 - 211 6.4e-07 Dual specificity phosphatase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024989)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056761
rosa_rugosa Rorug05G0301600 Rorug05G0301600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
AccB1I GGYRCC 2 cut(s) 16, 79
AccBSI CCGCTC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 555
AccII CGCG 1 cut(s) 545
AciI CCGC 2 cut(s) 226, 256
AcoI YGGCCR 1 cut(s) 382
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 3 cut(s) 83, 157, 232
AflII CTTAAG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 4 cut(s) 95, 353, 431, 587
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 3 cut(s) 91, 141, 442
AluI AGCT 3 cut(s) 91, 141, 442
AoxI GGCC 1 cut(s) 382
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 2 cut(s) 82, 545
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 211
BaeI ACNNNNGTAYC 2 cut(s) 8, 41
BanI GGYRCC 2 cut(s) 16, 79
BccI CCATC 2 cut(s) 36, 376
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 84
BciVI GTATCC 1 cut(s) 408
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 280
BfuI GTATCC 1 cut(s) 408
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 84, 482
BmgBI CACGTC 1 cut(s) 634
BmiI GGNNCC 2 cut(s) 18, 81
BmrFI CCNGG 2 cut(s) 84, 482
BmsI GCATC 3 cut(s) 116, 249, 325
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 157, 232
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 4 cut(s) 54, 243, 273, 489
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 4 cut(s) 147, 264, 316, 570
BseLI CCNNNNNNNGG 3 cut(s) 83, 157, 232
BseMI GCAATG 4 cut(s) 54, 243, 273, 489
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 2 cut(s) 16, 79
BsiEI CGRYCG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 77, 482
BslI CCNNNNNNNGG 3 cut(s) 83, 157, 232
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 384
Bsp143I GATC 4 cut(s) 3, 10, 199, 333
BspACI CCGC 2 cut(s) 226, 256
BspANI GGCC 1 cut(s) 384
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 2 cut(s) 18, 81
BspMI ACCTGC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 2 cut(s) 16, 79
BspTI CTTAAG 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 256
BsrDI GCAATG 4 cut(s) 54, 243, 273, 489
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 4 cut(s) 3, 10, 199, 333
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 130
BstC8I GCNNGC 5 cut(s) 36, 78, 193, 264, 514
BstDEI CTNAG 2 cut(s) 60, 165
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 4 cut(s) 147, 264, 316, 570
BstFNI CGCG 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 2 cut(s) 82, 545
BstKTI GATC 4 cut(s) 6, 13, 202, 336
BstMBI GATC 4 cut(s) 3, 10, 199, 333
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 6 cut(s) 44, 77, 88, 466, 513, 578
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 82, 480
BstUI CGCG 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 4 cut(s) 147, 264, 316, 570
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 5 cut(s) 36, 78, 193, 264, 514
CfoI GCGC 2 cut(s) 82, 545
Cfr10I RCCGGY 1 cut(s) 76
Csp6I GTAC 1 cut(s) 25
CviAII CATG 5 cut(s) 73, 208, 416, 465, 508
CviJI RGCY 9 cut(s) 71, 91, 99, 141, 195, 384, 442, 469, 531
CviKI_1 RGCY 9 cut(s) 71, 91, 99, 141, 195, 384, 442, 469, 531
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 60, 165
DinI GGCGCC 1 cut(s) 81
DpnI GATC 4 cut(s) 5, 12, 201, 335
DpnII GATC 4 cut(s) 3, 10, 199, 333
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaeI CATG 5 cut(s) 76, 211, 419, 468, 511
FatI CATG 5 cut(s) 72, 207, 415, 464, 507
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 1 cut(s) 555
FokI GGATG 4 cut(s) 134, 271, 303, 577
GlaI GCGC 2 cut(s) 81, 544
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 1 cut(s) 384
HapII CCGG 2 cut(s) 77, 482
HhaI GCGC 2 cut(s) 82, 545
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 5 cut(s) 76, 211, 419, 468, 511
Hin6I GCGC 2 cut(s) 80, 543
HinP1I GCGC 2 cut(s) 80, 543
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 2 cut(s) 89, 440
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 2 cut(s) 77, 482
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 57, 556
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 4 cut(s) 203, 320, 428, 472
Hpy8I GTNNAC 2 cut(s) 57, 556
HpyAV CCTTC 1 cut(s) 614
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 251, 266, 348, 460, 507
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 77, 88, 466, 513, 578
HpyF3I CTNAG 2 cut(s) 60, 165
HpySE526I ACGT 1 cut(s) 633
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 5 cut(s) 76, 211, 419, 468, 511
HspAI GCGC 2 cut(s) 80, 543
KasI GGCGCC 1 cut(s) 79
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 10
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 4 cut(s) 3, 10, 199, 333
LguI GCTCTTC 1 cut(s) 348
LweI GCATC 3 cut(s) 116, 249, 325
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 5 cut(s) 134, 152, 476, 629, 634
MalI GATC 4 cut(s) 5, 12, 201, 335
MbiI CCGCTC 1 cut(s) 256
MboI GATC 4 cut(s) 3, 10, 199, 333
MboII GAAGA 2 cut(s) 77, 365
MflI RGATCY 1 cut(s) 333
MluCI AATT 1 cut(s) 658
Mly113I GGCGCC 1 cut(s) 80
MnlI CCTC 6 cut(s) 168, 306, 353, 387, 435, 568
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 4 cut(s) 56, 131, 533, 661
MslI CAYNNNNRTG 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 130
MspI CCGG 2 cut(s) 77, 482
MspR9I CCNGG 2 cut(s) 84, 482
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 6 cut(s) 44, 77, 88, 466, 513, 578
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 1 cut(s) 482
NdeII GATC 4 cut(s) 3, 10, 199, 333
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 5 cut(s) 76, 211, 419, 468, 511
NlaIV GGNNCC 2 cut(s) 18, 81
NmuCI GTSAC 3 cut(s) 476, 629, 634
NspI RCATGY 1 cut(s) 211
PciI ACATGT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 582
PluTI GGCGCC 1 cut(s) 83
PscI ACATGT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 18, 81
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 56, 131, 533, 661
Sau3AI GATC 4 cut(s) 3, 10, 199, 333
ScrFI CCNGG 2 cut(s) 84, 482
SfaNI GCATC 3 cut(s) 116, 249, 325
SfoI GGCGCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 130, 470
SmoI CTYRAG 2 cut(s) 130, 470
Sse9I AATT 1 cut(s) 658
SsiI CCGC 2 cut(s) 226, 256
SspDI GGCGCC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 82, 480
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 1 cut(s) 636
TaqI TCGA 2 cut(s) 274, 523
TasI AATT 1 cut(s) 658
Tru1I TTAA 4 cut(s) 56, 131, 533, 661
Tru9I TTAA 4 cut(s) 56, 131, 533, 661
TscAI CASTG 1 cut(s) 509
TseFI GTSAC 3 cut(s) 476, 629, 634
Tsp45I GTSAC 3 cut(s) 476, 629, 634
TspDTI ATGAA 2 cut(s) 65, 633
TspGWI ACGGA 3 cut(s) 140, 187, 236
TspRI CASTG 1 cut(s) 509
Vha464I CTTAAG 1 cut(s) 130
XceI RCATGY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.