RchiOBHm_Chr5g0060101

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
65236349 .. 65237421
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33663

Sequence Viewer

Length: 270 bp
ATGCGAAAAAGTGTGCAACTGATTGTTTCGGCGCTGTTCCTTTGTCTGTTGAAGCTCCCACAGTTAGAATCTGTTCCTCAGTTGACAGTACAAACTTCTGTGGAAAATAGTTTCTCTTATGCAGATTCTATTTGTTCCCCGATTTCATATCTGGATAAGTCACTGCTGCTATTTCAAGGTATAGCTATCAATTTTCATCATTTCCAATCAATTACTAACTTCTATATCAATTGTCTTTATCTTCATATTATCCAGTTCCTATTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

6.8

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 90
AgsI TTSAA 2 cut(s) 52, 176
AluBI AGCT 2 cut(s) 55, 185
AluI AGCT 2 cut(s) 55, 185
ApeKI GCWGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 63, 88
BstDEI CTNAG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 2 cut(s) 55, 185
CviKI_1 RGCY 2 cut(s) 55, 185
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 78
FaiI YATR 5 cut(s) 120, 148, 182, 225, 246
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 35
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 2 cut(s) 68, 125
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 63, 88
HpyCH4V TGCA 2 cut(s) 16, 122
HpyF3I CTNAG 1 cut(s) 78
HspAI GCGC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 2 cut(s) 137, 266
Lsp1109I GCAGC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 159
MboII GAAGA 1 cut(s) 233
MfeI CAATTG 1 cut(s) 229
MluCI AATT 3 cut(s) 190, 210, 229
MnlI CCTC 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 72
MunI CAATTG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 68, 125
PkrI GCNGC 1 cut(s) 168
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SatI GCNGC 1 cut(s) 167
SetI ASST 3 cut(s) 57, 181, 187
SgeI CNNG 4 cut(s) 151, 164, 188, 265
Sse9I AATT 3 cut(s) 190, 210, 229
TaaI ACNGT 2 cut(s) 63, 88
TasI AATT 3 cut(s) 190, 210, 229
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 2 cut(s) 68, 125
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 3 cut(s) 135, 185, 233
TspRI CASTG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.