RchiOBHm_Chr5g0070421

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
76146051 .. 76146372
322 bp
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UTR
Exon/CDS
Intron
PRQ34565

Sequence Viewer

Length: 297 bp
ATGATGCATCGTCTGCTCCAACACAACCCAACTCAAACCCCTCGCACGAACCCGACACGGAAGTCAAACCTGTATCAAATTTTCTTGAATGAGGAGATTCAACAGGTGTTGTTAGCTCCGCACAGCTCCAGGAACTCATCAGAATTCGAAGATTTCCAGGATCTAAGCCTCAGCGATTGGTGTGGAGTAGTGAACCAGCGGTTTTCAGAGAGAAAAACAATCAAGTGGAAGGCTAATCTCGATAAGTACTTGTTAGCGTCGCCTCTATCCAAAACCGGCTTGGACAAAATCTCCTGA

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

9.25

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030167)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0070421
rosa_samantha Rh5DG491600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AciI CCGC 2 cut(s) 119, 199
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 78, 143
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 2 cut(s) 88, 101
AjnI CCWGG 2 cut(s) 128, 156
AluBI AGCT 2 cut(s) 116, 126
AluI AGCT 2 cut(s) 116, 126
AlwI GGATC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 78, 143
AsuII TTCGAA 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 130, 158
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 130, 158
BmrFI CCNGG 2 cut(s) 130, 158
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 147
BsaXI ACNNNNNCTCC 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 275
BseBI CCWGG 2 cut(s) 130, 158
BseMII CTCAG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 276
Bsp119I TTCGAA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 119, 199
BspCNI CTCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 130, 158
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 164, 170
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 2 cut(s) 130, 158
BstSCI CCNGG 2 cut(s) 128, 156
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 275
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 5 cut(s) 116, 126, 168, 233, 279
CviKI_1 RGCY 5 cut(s) 116, 126, 168, 233, 279
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 164, 170
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 128, 156
EcoT22I ATGCAT 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 112
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 246
HinfI GANTC 1 cut(s) 97
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 142, 208
Hpy188III TCNNGA 3 cut(s) 85, 239, 294
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 164, 170
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 21, 121, 131
LpnPI CCDG 8 cut(s) 83, 89, 115, 142, 143, 170, 209, 289
LweI GCATC 1 cut(s) 16
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 78, 143
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 51, 85, 179, 273
Mph1103I ATGCAT 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 130, 158
MvaI CCWGG 2 cut(s) 130, 158
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 9
NspV TTCGAA 1 cut(s) 147
PfeI GAWTC 1 cut(s) 97
PfoI TCCNGGA 2 cut(s) 128, 156
Psp6I CCWGG 2 cut(s) 128, 156
PspGI CCWGG 2 cut(s) 128, 156
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 160
ScaI AGTACT 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 130, 158
SetI ASST 4 cut(s) 72, 108, 118, 128
SfaNI GCATC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 147
Sse9I AATT 2 cut(s) 78, 143
SsiI CCGC 2 cut(s) 119, 199
StyD4I CCNGG 2 cut(s) 128, 156
TaqI TCGA 2 cut(s) 147, 240
TasI AATT 2 cut(s) 78, 143
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 73
XapI RAATTY 2 cut(s) 78, 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.