RchiOBHm_Chr5g0082441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030200
Physical Location & Seq
Reverse (-)
88428386 .. 88430597
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35665

Sequence Viewer

Length: 636 bp
ATGACACAGGAGAGTGGATATCCTGTGCGTGGAGCTTCTACTATCTCCATTGACCATCTCCATTGTTCATCATCATCTTCTACTTTGGTCAACTTCAGTTCAATTCCATCCACATCATCTTCTACCCATAACCCAATTAGCCTCAAAACCTTTGAATTCGTTGAAAACAATCAGAACCCCTATTTGGTTATTTACCAAACAACGTTTTTCTCAATTGGGTCACTGAAAACTCCCCCTCCGTGGAGCTCAAGTCGGTCCTGCACGCAACAAGAACTGCCGCTCACCTCGTTCGATTGGAACGAGGCGGCCTGGATCGCATCGGATCGGACTGATCCAATTTGGACTGGGTTTCACCGATGCTTCGCTGTACTCATCGGCGGAATGGCTTGGAGGTGCAAGTTCGAGGTTTGCCGGGCGACGTCTAATCTTTGGTGGCCTGGATCGCATCTGATCGGACTGATCCGATCTGGACTAGGTTCACAGATCCAAGCTGGGGATCGATTTGCCTGGAGGAGGCGGCACTTTTATTTGGTGCGACGGGGATGGCGGAATGACGGCGTTGCAGGATTCAAGGGATGTAGGAGAGAAATCGGTGGGGTGGGGTGGGGTGGGGGGGAGAGAGAGAGAGATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.74

Weight (kDa)

9.41

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030200)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0082441
rosa_multiflora Rmu_ssc0000183.1_g000021

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 280
AciI CCGC 5 cut(s) 278, 305, 378, 517, 547
AclI AACGTT 1 cut(s) 203
AclWI GGATC 7 cut(s) 320, 326, 330, 448, 454, 478, 504
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 5 cut(s) 29, 184, 240, 493, 513
AgsI TTSAA 4 cut(s) 102, 155, 164, 571
AjnI CCWGG 3 cut(s) 308, 436, 506
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 35, 246, 491
AluI AGCT 3 cut(s) 35, 246, 491
Alw21I GWGCWC 1 cut(s) 248
AlwI GGATC 7 cut(s) 320, 326, 330, 448, 454, 478, 504
AoxI GGCC 2 cut(s) 306, 434
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 274, 344
AvaII GGWCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 248
BccI CCATC 3 cut(s) 63, 115, 537
BceAI ACGGC 1 cut(s) 571
BciT130I CCWGG 3 cut(s) 310, 438, 508
BcnI CCSGG 1 cut(s) 413
BfaI CTAG 1 cut(s) 473
BisI GCNGC 3 cut(s) 278, 306, 518
BlsI GCNGC 3 cut(s) 279, 307, 519
Bme1390I CCNGG 4 cut(s) 310, 413, 438, 508
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmrFI CCNGG 4 cut(s) 310, 413, 438, 508
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 3 cut(s) 326, 347, 454
BmuI ACTGGG 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 499
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 220, 235, 250, 265
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 184, 240, 493, 513
Bse1I ACTGG 1 cut(s) 349
BseBI CCWGG 3 cut(s) 310, 438, 508
BseCI ATCGAT 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 107, 548, 581
BseLI CCNNNNNNNGG 5 cut(s) 29, 184, 240, 493, 513
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 2 cut(s) 308, 436
BshVI ATCGAT 1 cut(s) 499
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 5 cut(s) 29, 184, 240, 493, 513
BsnI GGCC 2 cut(s) 308, 436
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
BspACI CCGC 5 cut(s) 278, 305, 378, 517, 547
BspANI GGCC 2 cut(s) 308, 436
BspDI ATCGAT 1 cut(s) 499
BspPI GGATC 7 cut(s) 320, 326, 330, 448, 454, 478, 504
BsrBI CCGCTC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
BssNI GRCGYC 1 cut(s) 419
Bst2UI CCWGG 3 cut(s) 310, 438, 508
BstACI GRCGYC 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 511
BstF5I GGATG 3 cut(s) 107, 548, 581
BstKTI GATC 9 cut(s) 315, 325, 334, 443, 453, 462, 467, 486, 499
BstMBI GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
BstMWI GCNNNNNNNGC 2 cut(s) 314, 442
BstNI CCWGG 3 cut(s) 310, 438, 508
BstSCI CCNGG 4 cut(s) 308, 411, 436, 506
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 499
BsuRI GGCC 2 cut(s) 308, 436
BsuTUI ATCGAT 1 cut(s) 499
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 3 cut(s) 107, 548, 581
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 499
Csp6I GTAC 1 cut(s) 368
CviJI RGCY 7 cut(s) 35, 141, 246, 308, 386, 436, 491
CviKI_1 RGCY 7 cut(s) 35, 141, 246, 308, 386, 436, 491
CviQI GTAC 1 cut(s) 368
DpnI GATC 9 cut(s) 314, 324, 333, 442, 452, 461, 466, 485, 498
DpnII GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
EciI GGCGGA 2 cut(s) 393, 562
Ecl136II GAGCTC 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 248
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 308, 436, 506
EcoRV GATATC 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 248
FaiI YATR 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 278, 306, 518
FokI GGATG 3 cut(s) 94, 555, 588
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 278, 306, 518
FspBI CTAG 1 cut(s) 473
GluI GCNGC 3 cut(s) 278, 306, 518
GsaI CCCAGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 2 cut(s) 308, 436
HapII CCGG 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 567
HpaII CCGG 1 cut(s) 412
HphI GGTGA 2 cut(s) 274, 344
Hpy166II GTNNAC 2 cut(s) 91, 479
Hpy188I TCNGA 6 cut(s) 174, 322, 327, 450, 455, 464
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 2 cut(s) 91, 479
Hpy99I CGWCG 2 cut(s) 421, 540
HpyCH4IV ACGT 2 cut(s) 203, 419
HpyCH4V TGCA 3 cut(s) 261, 396, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 442
HpySE526I ACGT 2 cut(s) 203, 419
Hsp92I GRCGYC 1 cut(s) 419
Kzo9I GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
LmnI GCTCC 2 cut(s) 32, 243
LweI GCATC 3 cut(s) 326, 347, 454
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 203, 419
MaeIII GTNAC 1 cut(s) 219
MalI GATC 9 cut(s) 314, 324, 333, 442, 452, 461, 466, 485, 498
MbiI CCGCTC 1 cut(s) 280
MboI GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
MboII GAAGA 2 cut(s) 69, 111
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 5 cut(s) 102, 135, 155, 213, 336
MnlI CCTC 8 cut(s) 152, 246, 295, 295, 384, 397, 504, 507
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 4 cut(s) 310, 413, 438, 508
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 3 cut(s) 310, 438, 508
MwoI GCNNNNNNNGC 2 cut(s) 314, 442
NciI CCSGG 1 cut(s) 413
NdeII GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
NmuCI GTSAC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PfeI GAWTC 1 cut(s) 567
PkrI GCNGC 3 cut(s) 279, 307, 519
Psp124BI GAGCTC 1 cut(s) 248
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 308, 436, 506
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 3 cut(s) 308, 436, 506
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacI GAGCTC 1 cut(s) 248
SatI GCNGC 3 cut(s) 278, 306, 518
Sau3AI GATC 9 cut(s) 312, 322, 331, 440, 450, 459, 464, 483, 496
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 4 cut(s) 310, 413, 438, 508
SduI GDGCHC 1 cut(s) 248
SfaNI GCATC 3 cut(s) 326, 347, 454
SinI GGWCC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 5 cut(s) 102, 135, 155, 213, 336
SsiI CCGC 5 cut(s) 278, 305, 378, 517, 547
SspMI CTAG 1 cut(s) 473
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 308, 411, 436, 506
TaiI ACGT 2 cut(s) 206, 422
TaqI TCGA 3 cut(s) 291, 402, 499
TaqII GACCGA 1 cut(s) 243
TasI AATT 5 cut(s) 102, 135, 155, 213, 336
TatI WGTACW 1 cut(s) 367
TauI GCSGC 3 cut(s) 280, 308, 520
TfiI GAWTC 1 cut(s) 567
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 255
XagI CCTNNNNNAGG 1 cut(s) 511
XapI RAATTY 1 cut(s) 155
XspI CTAG 1 cut(s) 473
ZraI GACGTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.