RchiOBHm_Chr6g0246081

L-galactose dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
1771727 .. 1772177
451 bp
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UTR
Exon/CDS
Intron
PRQ22058

Sequence Viewer

Length: 327 bp
ATGAAGACACATACTCTCAAATTTCTTGAAGAGGACAGTGGTCCTCCAGAATGGCACCCAGCATCTCCTGGATTAAAGTCTGCCTGCCAAGATGCTACTTTGTATTGTAAGGCGAGAGGGAAGAATATTTCAAAGCCAAGTATGGCTGGTTTCCAATATGGCTTGTCAAATAAGGATTTCTTATCAGGGCTGGTTGGCATGAACTCTCTTAAACAGGTTCTATTCCATCACTTACCTTTCACTTGTGCATTGGTCAAGAATTATAACAATAGACTCCATTCTTCTTTAAAGAGTTTTAGTAGCATGATCACTGTGCGGAGGTTTTAA

Protein Analysis

108

Amino Acids

12.09

Weight (kDa)

9.72

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030343)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0246081
rosa_samantha Rh6CG028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 54
AciI CCGC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 20
AgsI TTSAA 2 cut(s) 29, 132
AjnI CCWGG 1 cut(s) 67
ApoI RAATTY 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 69
BclI TGATCA 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 71, 82
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 54
BssMI GATC 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 38, 313
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 69
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 43, 309
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 2 cut(s) 199, 304
CviJI RGCY 4 cut(s) 136, 146, 162, 190
CviKI_1 RGCY 4 cut(s) 136, 146, 162, 190
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 202, 307
FaiI YATR 6 cut(s) 12, 143, 159, 200, 264, 305
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 2 cut(s) 198, 303
FbaI TGATCA 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 30
Hin1II CATG 2 cut(s) 202, 307
HinfI GANTC 1 cut(s) 273
Hpy188III TCNNGA 3 cut(s) 26, 47, 256
HpyCH4III ACNGT 2 cut(s) 38, 313
HpyCH4V TGCA 1 cut(s) 248
Hsp92II CATG 2 cut(s) 202, 307
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 9 cut(s) 54, 60, 72, 81, 97, 132, 171, 176, 200
LweI GCATC 2 cut(s) 71, 82
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 4 cut(s) 16, 41, 133, 273
MluCI AATT 2 cut(s) 20, 259
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 4 cut(s) 25, 54, 110, 312
MseI TTAA 4 cut(s) 74, 210, 287, 325
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 1 cut(s) 306
NlaIII CATG 2 cut(s) 202, 307
NlaIV GGNNCC 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 67
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PshAI GACNNNNGTC 1 cut(s) 39
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 41
SaqAI TTAA 4 cut(s) 74, 210, 287, 325
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 69
SetI ASST 3 cut(s) 219, 238, 323
SfaNI GCATC 2 cut(s) 71, 82
SinI GGWCC 1 cut(s) 41
Sse9I AATT 2 cut(s) 20, 259
SsiI CCGC 1 cut(s) 316
SspI AATATT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 38, 313
TasI AATT 2 cut(s) 20, 259
Tru1I TTAA 4 cut(s) 74, 210, 287, 325
Tru9I TTAA 4 cut(s) 74, 210, 287, 325
TscAI CASTG 2 cut(s) 43, 316
TspDTI ATGAA 2 cut(s) 17, 215
TspRI CASTG 2 cut(s) 43, 316
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.