RchiOBHm_Chr6g0249971

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
5683166 .. 5684031
866 bp
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UTR
Exon/CDS
Intron
PRQ22408

Sequence Viewer

Length: 237 bp
ATGATGTCTTTGAGTTTTAGAGGCGAGGAGCCGAGGATACTCGAAAGACTTTTACAGACCATCTATACACTGCATTGTATCATCATGGAATCACAACTTTCAGGGATGATCCTGAACTTCACAAAGGGGAAGCTATTTCTCCGGCACGTTTTGCTGCAATTGAAGAATCAAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGGCAACATGGTGCTTGGATGAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.25

Weight (kDa)

9.86

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030365)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0246701 RchiOBHm_Chr6g0249971

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 103
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 30
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 111, 231
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 142
Bsp143I GATC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 151
BstF5I GGATG 2 cut(s) 111, 231
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 141
BsuI GTATCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 111, 231
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
CviAII CATG 2 cut(s) 85, 215
CviJI RGCY 2 cut(s) 31, 133
CviKI_1 RGCY 2 cut(s) 31, 133
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 2 cut(s) 88, 218
FaiI YATR 4 cut(s) 66, 86, 203, 216
FatI CATG 2 cut(s) 84, 214
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
HapII CCGG 1 cut(s) 142
Hin1II CATG 2 cut(s) 88, 218
HinfI GANTC 2 cut(s) 89, 166
HpaII CCGG 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 112, 170
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 73, 157, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 88, 218
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 87, 125, 155
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 214
MaeII ACGT 1 cut(s) 147
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 175
MfeI CAATTG 1 cut(s) 158
MluCI AATT 2 cut(s) 158, 198
MnlI CCTC 3 cut(s) 14, 19, 27
Mph1103I ATGCAT 1 cut(s) 207
MspI CCGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 88, 218
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 207
PfeI GAWTC 2 cut(s) 89, 166
PkrI GCNGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 30
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 108
SetI ASST 2 cut(s) 135, 150
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 2 cut(s) 158, 198
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 158, 198
TfiI GAWTC 2 cut(s) 89, 166
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 154
TspRI CASTG 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.