RchiOBHm_Chr6g0256711

DNA-directed 5'-3' RNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030411
Physical Location & Seq
Forward (+)
11989687 .. 11992686
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23030

Sequence Viewer

Length: 3000 bp
ATGGTAAAATTTCGGTTCCATTGTTTCTCTTTCCAAAGTTTATCTTACTGTAATGTATTACAGCTTCCAAATACTAGTATTATCAAGTTTGGTTCACCAAATACTAGTATTATCAAGTTTGGTTCACGTGCGTATTGTGGTGATATAAATAATAATGAGTCGAATCAGATAAAGGACATTAAACAGATAAGGAAAGAAAGTAGTATTGAATTACCTAAGGGATATAGGATTGAATTAAATAAAGAAAGTCTGATTGATTCTTTCTTGACAAATTTTTTTGAAAAAATAAAACCTGAGTATGATAATAAAGATAAATCTAAAAAATCAAAATATTATGATGAAGTTTTAAATATGTTAAAAACTTTTGAAGATAGAGAGAATGATGAAGAATTAAAAAAACTACAGTTTAAGATTGAAGAACTTACTACACAATATGACGATCTTAAAACACTATATCACCTAACACCTGACTTAATTAAGAGATTAATCTCTCCTGAGCTAGAGAGTGCAAAGGATTTTCTAAAAAGTAATATAGAAAAACTATATGATGATGATAAATTGCTTTTAAACGCTTTTGATCATTATACCTTGGAGGGGATCATGATAGTTGTCCTTGCTGCTGTGTTCCACAGTCTTCAAGAAACACCAGCTGTTCGCGTATCTACTCTGGTAGAGTATCTTACTCTCTATTATAAAAACCATGCTAAATTGCTTAAAGACCGTAATATCAACCTATCTCCTAAAGAAAAAGATGAAGAACCTGCTAAAGAAAAAGATGAAGAACCTGCTAAAGAAAAAGATGAAGAACCTGCTACTATTAATACGAAAATTACTGATAAACAATGTTATAATATCGGTGCGTTATTAGTCGAGTTCTTATCGAGTCGAGAAGTTATCACACTAACGAATGATTTAAACACTGTGGAACAGTATGTAGCTCATAAGAAAAAGGGTAAATTTTATTATCCAAAATCCTTATTTGCCGTATGTAATTTTGATCTTGATCTTCTTCCGATCAAACTCAATCTACCAATGGTATACCCACCTAGGGCGTGGAAATCAAAGATCAAGAGGAAACCTAAATCTATGGGTGATCTGTGTGGTGGTTATTTAAGCGCACCTACTAATGATTTCTACATTCATCGCTTTAGCCTGTTAACTACTCGCGATATAGATCATTTTACCATTGTGTTTGAAAATGAAGGTCAAAGATTGATAGATACCATTAATGGTTTACAGTGTCAGGCTTTTGAAATAAACAGAGATGTATTAAGATTTATTAATAAAAATTACGATGACTTAGTGAAATCTGGGCTCCTAATGCCTAAGTTTCTAGCTTCATTGAATGTCTCCAAAACCATCGCACTATTAAGGGATGCTTACATAGCTGATCCATCTCTGAGTGGTGTTTGTAAATACCAAGAAATATTAAAGGAGTTCATGTCTCGGGTCCAACATTCTCGTTATGAAAGTTTCGTTATCAATTTAGCATCAGCCTACGAGGGCTATAAATTTTATTTGCCCGCATTCCTTGACTTTCGCGGAAGGATCTACCGCGCCGGAGTCTTACATTTCCATGAACGTGACTTAGCTAGAAGTCTAATAGTGTTTTCAAATAAAAGTAAGAAATTTGTATCAATGTCTATGGAAGACCATAAATTTTTGACTGCGATGATTACCTCTGCAGCTGCTTTTCATTTTAAGAAGTTTACTTCTAATATAGCAGCATTTGAATGGATGTCAAAACAGGGTATAATATTTATGAATGATGAGAGTATCACCACCAATGATGATGAGAGTATCATCAAGTTTGCTGTTGATGCTAGTAATCCCTTTCAGTTCATGAGTAAGGTTATATCTTTCAGAGATGATTGTGTTATAGGTATTGAACAACTTCCTATTTTCCAAGACGCCTCAGCAAGTGCTTATCAGATTATGAGCATCTTTTTGCTAGATAAAAAAATAGCTGAACACACGAACCTCATACCTTCAGATCAGATCCAAGATATATACACCTATTTTCTAGAAGAGTTAAAGAATTATCTGGTGATTTATTCTTCATTTGACCCCTCTTTTGTTAACATAATTTGTGAGCGTTTCACACGAAAATTAGTAAAATGTCTATTTATGCCATTGATTTATGGTAAAAGTGTATTGAGCATGGCGAATGATATTCATTGTCATTATAATACCATATTAAGTAAAAAGGAATGTATGGGTTTAGCATCTGACATCAATAAGTTCTTTCAAAAAAGATTTCCAGGTATTGTGAATTTAATGGAATTGATTCGCTTGATTGGATGGGTCTCTTCAAACAAGGATAAACCAGTCTTCTATAGTACGCCTTTTTTGACTACTGTACAAGACTATATGATATCTAAACCTGTGAATATATGGGTATATGATCGTATCCATAAGAAAAGACGTCAAGTAACTCTACGAATTCCCTCGATGCTTCGAGATCGAAAGAAAACCACAACAGCAACCTTTGCCAACTTTATTCATCAGCAGGATGCAAATATAGCCATGAGTATGGTTTCTAAGATGTTAGGTATGGGTATACCAATCTATACAGTTCACGACAATTTCATTACAGCTGGGATAAATGTGAAAAGAATTTCTTCTCTATATATTAATACTTTAATAGAAATTATGGTTAATCCTTTACCTTTGATCAACTTTTTTATTACTCGTAATCTGCTGGATGGGTGTACAGTTCCTCATTGTTTTGATAGACCACTTCCAATTGATTATCTTCAAGAAATCTTGGATGATAGAATACCAAAGAAAAACATAAGTAGTTCTAAGAAGAAACAGTGGGAAATGAGGAATCAATGTATAATTACAGCTTATAAGGAATATGTTTATCCATTATGTACGGATGATGATATAATATTATATAATAATGTTAGCGCCTCGTACAATTATAAATGCGAAGACTTCAAATCTTGTATGCGAGATTTTAAAGAGGGTGATACCTATTTTGCATTACACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RNA_pol RPOL_N

Protein Analysis

999

Amino Acids

116.1

Weight (kDa)

8.39

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol PF00940 608 - 885 3e-20 DNA-dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030411)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0256711
rosa_samantha Rh6AG048500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 6 cut(s) 693, 849, 2187, 2853, 2928, 2998
AatII GACGTC 1 cut(s) 2428
Acc36I ACCTGC 3 cut(s) 769, 793, 817
AccI GTMKAC 2 cut(s) 1038, 2560
AccII CGCG 4 cut(s) 657, 1167, 1542, 1557
AciI CCGC 3 cut(s) 1524, 1542, 1555
AclWI GGATC 4 cut(s) 605, 1385, 1556, 1993
AcsI RAATTY 9 cut(s) 8, 271, 956, 1511, 1628, 1658, 2272, 2442, 2616
AcuI CTGAAG 1 cut(s) 1974
AcvI CACGTG 1 cut(s) 128
AcyI GRCGYC 2 cut(s) 1911, 2425
AfaI GTAC 5 cut(s) 2341, 2361, 2713, 2878, 2921
AfiI CCNNNNNNNGG 2 cut(s) 594, 1048
AhlI ACTAGT 2 cut(s) 74, 104
AjnI CCWGG 1 cut(s) 2260
Alw26I GTCTC 3 cut(s) 1354, 1449, 2311
AlwI GGATC 4 cut(s) 605, 1385, 1556, 1993
Ama87I CYCGRG 1 cut(s) 1446
ApeKI GCWGC 4 cut(s) 617, 1685, 1688, 1724
ApoI RAATTY 9 cut(s) 8, 271, 956, 1511, 1628, 1658, 2272, 2442, 2616
ArsI GACNNNNNNTTYG 2 cut(s) 2057, 2089
AseI ATTAAT 5 cut(s) 485, 819, 1227, 1281, 2634
Asp700I GAANNNNTTC 3 cut(s) 1893, 2286, 2620
AspA2I CCTAGG 1 cut(s) 1046
AspLEI GCGC 3 cut(s) 1118, 1559, 2915
AspS9I GGNCC 1 cut(s) 1450
AsuHPI GGTGA 7 cut(s) 87, 152, 449, 1103, 1771, 2059, 2984
AvaI CYCGRG 1 cut(s) 1446
AvaII GGWCC 1 cut(s) 1450
AvrII CCTAGG 1 cut(s) 1046
AxyI CCTNAGG 1 cut(s) 216
BanII GRGCYC 1 cut(s) 1317
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbrPI CACGTG 1 cut(s) 128
BbsI GAAGAC 4 cut(s) 626, 1656, 2323, 2943
BbvCI CCTCAGC 1 cut(s) 1915
BbvI GCAGC 4 cut(s) 604, 1675, 1697, 1736
BccI CCATC 4 cut(s) 1367, 1402, 2295, 2699
BceAI ACGGC 1 cut(s) 968
BciT130I CCWGG 1 cut(s) 2262
BciVI GTATCC 1 cut(s) 2420
BclI TGATCA 2 cut(s) 577, 2673
BcoDI GTCTC 3 cut(s) 1354, 1449, 2311
BcuI ACTAGT 2 cut(s) 74, 104
BfaI CTAG 9 cut(s) 75, 105, 500, 1047, 1334, 1593, 1824, 1952, 2024
BfmI CTRYAG 3 cut(s) 401, 1683, 2335
BfoI RGCGCY 1 cut(s) 2916
BfuAI ACCTGC 3 cut(s) 769, 793, 817
BfuI GTATCC 1 cut(s) 2420
BisI GCNGC 4 cut(s) 618, 1686, 1689, 1725
BlnI CCTAGG 1 cut(s) 1046
BlsI GCNGC 4 cut(s) 619, 1687, 1690, 1726
Bme1390I CCNGG 1 cut(s) 2262
Bme18I GGWCC 1 cut(s) 1450
BmeT110I CYCGRG 1 cut(s) 1446
BmgT120I GGNCC 1 cut(s) 1450
BmiI GGNNCC 3 cut(s) 17, 1316, 1451
BmrFI CCNGG 1 cut(s) 2262
BmsI GCATC 7 cut(s) 1366, 1499, 1810, 1950, 2234, 2442, 2503
BpiI GAAGAC 4 cut(s) 626, 1656, 2323, 2943
Bpu10I CCTNAGC 2 cut(s) 495, 1915
BsaAI YACGTR 1 cut(s) 128
BsaBI GATNNNNATC 2 cut(s) 1002, 1173
BsaHI GRCGYC 2 cut(s) 1911, 2425
BsaI GGTCTC 1 cut(s) 2311
BsaJI CCNNGG 2 cut(s) 588, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 1427, 1457
Bsc4I CCNNNNNNNGG 2 cut(s) 594, 1048
Bse1I ACTGG 1 cut(s) 2327
Bse21I CCTNAGG 1 cut(s) 216
Bse8I GATNNNNATC 2 cut(s) 1002, 1173
BseBI CCWGG 1 cut(s) 2262
BseDI CCNNGG 2 cut(s) 588, 1046
BseGI GGATG 7 cut(s) 1381, 1743, 2306, 2518, 2710, 2776, 2887
BseJI GATNNNNATC 2 cut(s) 1002, 1173
BseLI CCNNNNNNNGG 2 cut(s) 594, 1048
BseMII CTCAG 4 cut(s) 285, 486, 1391, 1929
BseNI ACTGG 1 cut(s) 2327
BseXI GCAGC 4 cut(s) 604, 1675, 1697, 1736
BseYI CCCAGC 1 cut(s) 2597
Bsh1236I CGCG 4 cut(s) 657, 1167, 1542, 1557
BsiHKCI CYCGRG 1 cut(s) 1446
BsiSI CCGG 1 cut(s) 1560
BslI CCNNNNNNNGG 2 cut(s) 594, 1048
BsmAI GTCTC 3 cut(s) 1354, 1449, 2311
BsmI GAATGC 1 cut(s) 1526
Bso31I GGTCTC 1 cut(s) 2311
BsoBI CYCGRG 1 cut(s) 1446
Bsp1286I GDGCHC 1 cut(s) 1317
Bsp1407I TGTACA 2 cut(s) 2359, 2711
Bsp68I TCGCGA 1 cut(s) 1167
BspACI CCGC 3 cut(s) 1524, 1542, 1555
BspCNI CTCAG 4 cut(s) 286, 487, 1392, 1928
BspFNI CGCG 4 cut(s) 657, 1167, 1542, 1557
BspHI TCATGA 2 cut(s) 600, 1842
BspLI GGNNCC 3 cut(s) 17, 1316, 1451
BspMAI CTGCAG 1 cut(s) 1687
BspMI ACCTGC 3 cut(s) 769, 793, 817
BspPI GGATC 4 cut(s) 605, 1385, 1556, 1993
BspTNI GGTCTC 1 cut(s) 2311
BsrGI TGTACA 2 cut(s) 2359, 2711
BsrI ACTGG 1 cut(s) 2327
BssECI CCNNGG 2 cut(s) 588, 1046
BssNAI GTATAC 2 cut(s) 1039, 2561
BssNI GRCGYC 2 cut(s) 1911, 2425
BssT1I CCWWGG 2 cut(s) 588, 1046
Bst1107I GTATAC 2 cut(s) 1039, 2561
Bst2UI CCWGG 1 cut(s) 2262
Bst6I CTCTTC 2 cut(s) 2022, 2314
BstACI GRCGYC 2 cut(s) 1911, 2425
BstAPI GCANNNNNTGC 1 cut(s) 2489
BstAUI TGTACA 2 cut(s) 2359, 2711
BstBAI YACGTR 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 1524
BstF5I GGATG 7 cut(s) 1381, 1743, 2306, 2518, 2710, 2776, 2887
BstFNI CGCG 4 cut(s) 657, 1167, 1542, 1557
BstH2I RGCGCY 1 cut(s) 2916
BstHHI GCGC 3 cut(s) 1118, 1559, 2915
BstMAI GTCTC 3 cut(s) 1354, 1449, 2311
BstMWI GCNNNNNNNGC 5 cut(s) 1321, 1385, 1820, 2489, 2522
BstNI CCWGG 1 cut(s) 2262
BstSCI CCNGG 1 cut(s) 2260
BstSFI CTRYAG 3 cut(s) 401, 1683, 2335
BstUI CGCG 4 cut(s) 657, 1167, 1542, 1557
BstV1I GCAGC 4 cut(s) 604, 1675, 1697, 1736
BstV2I GAAGAC 4 cut(s) 626, 1656, 2323, 2943
BstX2I RGATCY 2 cut(s) 1548, 1998
BstXI CCANNNNNNTGG 1 cut(s) 2533
BstYI RGATCY 2 cut(s) 1548, 1998
BstZ17I GTATAC 2 cut(s) 1039, 2561
Bsu36I CCTNAGG 1 cut(s) 216
BsuI GTATCC 1 cut(s) 2420
BtgZI GCGATG 3 cut(s) 1127, 1345, 1685
BtsCI GGATG 7 cut(s) 1381, 1743, 2306, 2518, 2710, 2776, 2887
BtsIMutI CAGTG 3 cut(s) 918, 1244, 2822
BtuMI TCGCGA 1 cut(s) 1167
BveI ACCTGC 3 cut(s) 769, 793, 817
Cac8I GCNNGC 1 cut(s) 1524
CciI TCATGA 2 cut(s) 600, 1842
CfoI GCGC 3 cut(s) 1118, 1559, 2915
Cfr13I GGNCC 1 cut(s) 1450
CseI GACGC 1 cut(s) 1919
Csp6I GTAC 5 cut(s) 2340, 2360, 2712, 2877, 2920
CviAII CATG 7 cut(s) 601, 701, 1441, 1577, 1843, 2161, 2527
CviQI GTAC 5 cut(s) 2340, 2360, 2712, 2877, 2920
DraI TTTAAA 4 cut(s) 348, 567, 915, 2965
Eam1104I CTCTTC 2 cut(s) 2022, 2314
EarI CTCTTC 2 cut(s) 2022, 2314
Eco130I CCWWGG 2 cut(s) 588, 1046
Eco24I GRGCYC 1 cut(s) 1317
Eco31I GGTCTC 1 cut(s) 2311
Eco32I GATATC 1 cut(s) 2376
Eco47I GGWCC 1 cut(s) 1450
Eco57I CTGAAG 1 cut(s) 1974
Eco72I CACGTG 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 1446
EcoRI GAATTC 1 cut(s) 2442
EcoRII CCWGG 1 cut(s) 2260
EcoRV GATATC 1 cut(s) 2376
EcoT14I CCWWGG 2 cut(s) 588, 1046
EcoT38I GRGCYC 1 cut(s) 1317
ErhI CCWWGG 2 cut(s) 588, 1046
FaeI CATG 7 cut(s) 604, 704, 1444, 1580, 1846, 2164, 2530
FalI AAGNNNNNCTT 6 cut(s) 28, 60, 1363, 1395, 2605, 2637
FatI CATG 7 cut(s) 600, 700, 1440, 1576, 1842, 2160, 2526
FauI CCCGC 1 cut(s) 1531
FbaI TGATCA 2 cut(s) 577, 2673
FblI GTMKAC 2 cut(s) 1038, 2560
Fnu4HI GCNGC 4 cut(s) 618, 1686, 1689, 1725
FokI GGATG 7 cut(s) 1388, 1750, 2313, 2525, 2717, 2783, 2894
FriOI GRGCYC 1 cut(s) 1317
Fsp4HI GCNGC 4 cut(s) 618, 1686, 1689, 1725
FspBI CTAG 9 cut(s) 75, 105, 500, 1047, 1334, 1593, 1824, 1952, 2024
GlaI GCGC 3 cut(s) 1117, 1558, 2914
GluI GCNGC 4 cut(s) 618, 1686, 1689, 1725
GsaI CCCAGC 1 cut(s) 2601
HaeII RGCGCY 1 cut(s) 2916
HapII CCGG 1 cut(s) 1560
HgaI GACGC 1 cut(s) 1919
HhaI GCGC 3 cut(s) 1118, 1559, 2915
Hin1I GRCGYC 2 cut(s) 1911, 2425
Hin1II CATG 7 cut(s) 604, 704, 1444, 1580, 1846, 2164, 2530
Hin6I GCGC 3 cut(s) 1116, 1557, 2913
HinP1I GCGC 3 cut(s) 1116, 1557, 2913
HincII GTYRAC 2 cut(s) 1158, 2080
HindII GTYRAC 2 cut(s) 1158, 2080
HinfI GANTC 7 cut(s) 158, 163, 257, 883, 1563, 2287, 2830
HpaI GTTAAC 2 cut(s) 1158, 2080
HpaII CCGG 1 cut(s) 1560
HphI GGTGA 7 cut(s) 87, 152, 449, 1103, 1771, 2059, 2984
Hpy188I TCNGA 9 cut(s) 168, 252, 1014, 1401, 1865, 1932, 1993, 1998, 2230
HpyAV CCTTC 3 cut(s) 1196, 1539, 1998
HpyCH4IV ACGT 3 cut(s) 127, 1582, 2425
HpyCH4V TGCA 4 cut(s) 509, 1685, 2516, 2987
HpyF10VI GCNNNNNNNGC 5 cut(s) 1321, 1385, 1820, 2489, 2522
HpySE526I ACGT 3 cut(s) 127, 1582, 2425
Hsp92I GRCGYC 2 cut(s) 1911, 2425
Hsp92II CATG 7 cut(s) 604, 704, 1444, 1580, 1846, 2164, 2530
HspAI GCGC 3 cut(s) 1116, 1557, 2913
Ksp22I TGATCA 2 cut(s) 577, 2673
KspAI GTTAAC 2 cut(s) 1158, 2080
LmnI GCTCC 1 cut(s) 1320
Lsp1109I GCAGC 4 cut(s) 604, 1675, 1697, 1736
LweI GCATC 7 cut(s) 1366, 1499, 1810, 1950, 2234, 2442, 2503
MaeI CTAG 9 cut(s) 75, 105, 500, 1047, 1334, 1593, 1824, 1952, 2024
MaeII ACGT 3 cut(s) 127, 1582, 2425
MaeIII GTNAC 2 cut(s) 1583, 2431
MfeI CAATTG 1 cut(s) 2745
MflI RGATCY 2 cut(s) 1548, 1998
MhlI GDGCHC 1 cut(s) 1317
MlyI GAGTC 3 cut(s) 167, 892, 1572
MmeI TCCRAC 1 cut(s) 1477
MroXI GAANNNNTTC 3 cut(s) 1893, 2286, 2620
MslI CAYNNNNRTG 4 cut(s) 1575, 1581, 1732, 2531
MspA1I CMGCKG 3 cut(s) 650, 1688, 2597
MspI CCGG 1 cut(s) 1560
MspR9I CCNGG 1 cut(s) 2262
MunI CAATTG 1 cut(s) 2745
Mva1269I GAATGC 1 cut(s) 1526
MvaI CCWGG 1 cut(s) 2262
MvnI CGCG 4 cut(s) 657, 1167, 1542, 1557
MwoI GCNNNNNNNGC 5 cut(s) 1321, 1385, 1820, 2489, 2522
NlaIII CATG 7 cut(s) 604, 704, 1444, 1580, 1846, 2164, 2530
NlaIV GGNNCC 3 cut(s) 17, 1316, 1451
NmuCI GTSAC 1 cut(s) 1583
NruI TCGCGA 1 cut(s) 1167
PacI TTAATTAA 1 cut(s) 477
PagI TCATGA 2 cut(s) 600, 1842
PctI GAATGC 1 cut(s) 1526
PdmI GAANNNNTTC 3 cut(s) 1893, 2286, 2620
PfeI GAWTC 4 cut(s) 163, 257, 2287, 2830
PkrI GCNGC 4 cut(s) 619, 1687, 1690, 1726
PleI GAGTC 3 cut(s) 166, 891, 1571
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
PpsI GAGTC 3 cut(s) 166, 891, 1571
Ppu21I YACGTR 1 cut(s) 128
PshBI ATTAAT 5 cut(s) 485, 819, 1227, 1281, 2634
PsiI TTATAA 6 cut(s) 693, 849, 2187, 2853, 2928, 2998
Psp6I CCWGG 1 cut(s) 2260
PspCI CACGTG 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 2597
PspGI CCWGG 1 cut(s) 2260
PspN4I GGNNCC 3 cut(s) 17, 1316, 1451
PspPI GGNCC 1 cut(s) 1450
PstI CTGCAG 1 cut(s) 1687
PsuI RGATCY 2 cut(s) 1548, 1998
PvuII CAGCTG 3 cut(s) 650, 1688, 2597
RruI TCGCGA 1 cut(s) 1167
RsaI GTAC 5 cut(s) 2341, 2361, 2713, 2878, 2921
RsaNI GTAC 5 cut(s) 2340, 2360, 2712, 2877, 2920
RseI CAYNNNNRTG 4 cut(s) 1575, 1581, 1732, 2531
SatI GCNGC 4 cut(s) 618, 1686, 1689, 1725
Sau96I GGNCC 1 cut(s) 1450
SchI GAGTC 3 cut(s) 167, 892, 1572
ScrFI CCNGG 1 cut(s) 2262
SduI GDGCHC 1 cut(s) 1317
SfaNI GCATC 7 cut(s) 1366, 1499, 1810, 1950, 2234, 2442, 2503
SfcI CTRYAG 3 cut(s) 401, 1683, 2335
SinI GGWCC 1 cut(s) 1450
SmiMI CAYNNNNRTG 4 cut(s) 1575, 1581, 1732, 2531
SpeI ACTAGT 2 cut(s) 74, 104
SsiI CCGC 3 cut(s) 1524, 1542, 1555
SspI AATATT 4 cut(s) 332, 1428, 1758, 2895
SspMI CTAG 9 cut(s) 75, 105, 500, 1047, 1334, 1593, 1824, 1952, 2024
StyD4I CCNGG 1 cut(s) 2260
StyI CCWWGG 2 cut(s) 588, 1046
TaiI ACGT 3 cut(s) 130, 1585, 2428
TaqI TCGA 7 cut(s) 161, 870, 881, 886, 2450, 2458, 2464
TatI WGTACW 2 cut(s) 2359, 2711
TfiI GAWTC 4 cut(s) 163, 257, 2287, 2830
TscAI CASTG 3 cut(s) 925, 1244, 2822
TseFI GTSAC 1 cut(s) 1583
TseI GCWGC 4 cut(s) 617, 1685, 1688, 1724
Tsp45I GTSAC 1 cut(s) 1583
TspGWI ACGGA 1 cut(s) 2894
TspRI CASTG 3 cut(s) 925, 1244, 2822
VpaK11BI GGWCC 1 cut(s) 1450
VspI ATTAAT 5 cut(s) 485, 819, 1227, 1281, 2634
XapI RAATTY 9 cut(s) 8, 271, 956, 1511, 1628, 1658, 2272, 2442, 2616
XbaI TCTAGA 1 cut(s) 2023
XcmI CCANNNNNNNNNTGG 1 cut(s) 1050
XmaJI CCTAGG 1 cut(s) 1046
XmiI GTMKAC 2 cut(s) 1038, 2560
XmnI GAANNNNTTC 3 cut(s) 1893, 2286, 2620
XspI CTAG 9 cut(s) 75, 105, 500, 1047, 1334, 1593, 1824, 1952, 2024
ZraI GACGTC 1 cut(s) 2426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.