RchiOBHm_Chr6g0263051

Anthranilate phosphoribosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030385
Physical Location & Seq
Forward (+)
17838198 .. 17839700
1503 bp
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UTR
Exon/CDS
Intron
PRQ23591

Sequence Viewer

Length: 357 bp
ATGGCAGTGTCAACGCAGCTTCACTCACTTACCACTCTTGCTTCATTGACTCACCGCACTAAGGTCAAGTTTAACAGCGCCTGCTGCGCAGCTCTGTTTCCCAATGCAAAGCAAACAAGCCCATCCACGCTTTGCAGTGCTGTGCAGAGTGCACAGTCCACTGTTTCTGAGAGATCAAACCCACCATTTACTTCCTTCAATGAGTTGATTGAGTCCTTGATTGATAAGGTGGATTTGTCGGAGTCCGAAGCCAAAGCTTCATTGGAGTTCTTGCTGAGTGATGCTAATGAGGCTTTGATTAGCGCCTTTCTTGTGTTGTTGAGAGCCAAAGGAGAGACTTATGAAGAAGTCCCCTGA

Protein Analysis

118

Amino Acids

12.7

Weight (kDa)

5.07

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_trans_3N PF02885 68 - 117 1.7e-10 Glycosyl transferase family, helical bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030385)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0263051
rosa_samantha Rh6AG122000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 88
AciI CCGC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 3 cut(s) 19, 92, 257
AluI AGCT 3 cut(s) 19, 92, 257
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 329
Alw44I GTGCAC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 81
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 16, 84, 89
AspLEI GCGC 3 cut(s) 80, 89, 305
AsuHPI GGTGA 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 28, 71, 101
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 329
BfoI RGCGCY 2 cut(s) 81, 306
BisI GCNGC 3 cut(s) 17, 85, 90
BlsI GCNGC 3 cut(s) 18, 86, 91
BmsI GCATC 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 159, 266
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 28, 71, 101
BsgI GTGCAG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 154
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 2 cut(s) 160, 267
BssMI GATC 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 156, 163
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 60, 168, 275
BstF5I GGATG 1 cut(s) 122
BstH2I RGCGCY 2 cut(s) 81, 306
BstHHI GCGC 3 cut(s) 80, 89, 305
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 84, 86, 290
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 28, 71, 101
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 2 cut(s) 12, 142
BtsIMutI CAGTG 3 cut(s) 12, 142, 159
Cac8I GCNNGC 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 81
CfoI GCGC 3 cut(s) 80, 89, 305
CviJI RGCY 7 cut(s) 19, 92, 120, 251, 257, 293, 326
CviKI_1 RGCY 7 cut(s) 19, 92, 120, 251, 257, 293, 326
DdeI CTNAG 3 cut(s) 60, 168, 275
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
FaiI YATR 1 cut(s) 342
FaqI GGGAC 1 cut(s) 335
Fnu4HI GCNGC 3 cut(s) 17, 85, 90
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 17, 85, 90
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 3 cut(s) 79, 88, 304
GluI GCNGC 3 cut(s) 17, 85, 90
HaeII RGCGCY 2 cut(s) 81, 306
HhaI GCGC 3 cut(s) 80, 89, 305
Hin6I GCGC 3 cut(s) 78, 87, 303
HinP1I GCGC 3 cut(s) 78, 87, 303
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 3 cut(s) 49, 212, 242
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 12, 152, 159
Hpy188I TCNGA 3 cut(s) 169, 241, 247
Hpy8I GTNNAC 3 cut(s) 12, 152, 159
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 156, 163
HpyCH4V TGCA 4 cut(s) 107, 135, 145, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 86, 290
HpyF3I CTNAG 3 cut(s) 60, 168, 275
HspAI GCGC 3 cut(s) 78, 87, 303
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 1 cut(s) 94
Lsp1109I GCAGC 3 cut(s) 28, 71, 101
LweI GCATC 1 cut(s) 271
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 3 cut(s) 43, 221, 251
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 1 cut(s) 283
MseI TTAA 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 84, 86, 290
NdeII GATC 1 cut(s) 173
NsbI TGCGCA 1 cut(s) 88
PkrI GCNGC 3 cut(s) 18, 86, 91
PleI GAGTC 3 cut(s) 43, 220, 250
PpsI GAGTC 3 cut(s) 43, 220, 250
PstNI CAGNNNCTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 3 cut(s) 17, 85, 90
Sau3AI GATC 1 cut(s) 173
SchI GAGTC 3 cut(s) 43, 221, 251
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 21, 66, 94, 231, 259
SfaNI GCATC 1 cut(s) 271
SgeI CNNG 8 cut(s) 50, 79, 93, 129, 139, 229, 283, 323
SsiI CCGC 1 cut(s) 55
TaaI ACNGT 2 cut(s) 156, 163
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 3 cut(s) 12, 142, 166
TseI GCWGC 3 cut(s) 16, 84, 89
TspDTI ATGAA 3 cut(s) 33, 249, 357
TspRI CASTG 3 cut(s) 12, 142, 166
VneI GTGCAC 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.