RchiOBHm_Chr6g0267631

Belongs to the BI1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
24468369 .. 24473031
4663 bp
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UTR
Exon/CDS
Intron
PRQ24006

Sequence Viewer

Length: 243 bp
ATGAGGGCTTGCTCTCTACGGGTGTCCATCCTTCTCTGGTTGCGATTTGCTTCTCCCTTCTTTGGTGGTTCTGCTTCCCTTTTTGAGTTTGAGTTGGATTTTTGGCTTATGGTTTTCGTGGGCTACATGGTAGTCAACACCCAGGAGATGATTGAGAGGGCACACCTTGGTGATCTGGACTACGTGAAGCATCCCCCAACCCCTTTCACTGATTTCATTGCCGTTTTGTTCGCGCACACATAA

Protein Analysis

80

Amino Acids

9.25

Weight (kDa)

5.38

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030361)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267631
rosa_samantha Rh6AG156100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 62
AjnI CCWGG 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 168
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 163
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 141, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 141, 166
BseGI GGATG 2 cut(s) 27, 190
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 172
BspFNI CGCG 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 141, 166
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 27, 190
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 27, 190
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 235
CviAII CATG 1 cut(s) 127
CviJI RGCY 3 cut(s) 8, 106, 123
CviKI_1 RGCY 3 cut(s) 8, 106, 123
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 130
FaiI YATR 3 cut(s) 110, 128, 241
FatI CATG 1 cut(s) 126
FokI GGATG 2 cut(s) 14, 177
GlaI GCGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 41, 67
HpyCH4IV ACGT 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 22, 128, 155, 161
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 233
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 168
Ppu21I YACGTR 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 168
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 163
SetI ASST 2 cut(s) 168, 186
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 186
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.