RchiOBHm_Chr6g0308321

acetyltransferase At3g50280-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030417
Physical Location & Seq
Reverse (-)
66406341 .. 66407027
687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27722

Sequence Viewer

Length: 687 bp
ATGCCTGCAGCAAGATATATAAACCAACAGTACACAGCGAAATCCATGGCTTTCCCCAATATCAAACACATCTCAGAGTGCTTCATCCAGCCACACACTGTTTCCCAAGAATCGAAGCAACTCTTTTACTTGACCCCCTATGAACTCGTCATGCTCTCCGCCCACTATATCCAGAAAGGCCTCCTCTTCACCAAACCTCCTGAAGCCAACAGCCCCAATTTTCTCGGAACCCTTTTGGCGAAACTGAAGTACTCTCTTTCCCTCGCCCTAGTGCACTTCTACCCACTCGCCGGTCGCCTTGTGACCAAGAAAGAACAAGACCTTCATCTCTACTTTGTGTATGTGGATTGCAGCAACAGCCCCGGAGCCAAATTCATCCATGCTTCTCTTGACATGTCCATCTCCGACATTCTTTCCCCAATTGATGTGCCCTTGCTGGTTCGGTCCTTGTTTGATCACGACAGGGCGGTCAACCATGACGGCCACACCACGTCGCTGCTGACGGCTCAAGTAACGGAATTGGTCGACGGCGTTTTCATCGGGCTGTCAATGAACCACTGTCTCGGTGACGGAACATCTTACTGGCATTTCTTCAACACTTGGTCTGCAATTTTCCAAGCACAAGAAAACAATGTCACTCTTTCCAAGATCTCCAATCCACCAGTGTTGGATCGGTCTGAACTCTGA

Protein Analysis

228

Amino Acids

25.65

Weight (kDa)

6.39

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 24 - 209 2.3e-31 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030417)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308321
rosa_samantha Rh6AG475300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 159, 467
AclWI GGATC 1 cut(s) 678
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 2 cut(s) 222, 266
AfaI GTAC 2 cut(s) 32, 251
AfiI CCNNNNNNNGG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 1 cut(s) 595
AjiI CACGTC 1 cut(s) 492
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 566
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 1 cut(s) 678
AoxI GGCC 2 cut(s) 178, 481
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 3 cut(s) 8, 351, 496
ApoI RAATTY 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 444
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 181, 578
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 2 cut(s) 276, 432
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 20, 363, 483
BccI CCATC 1 cut(s) 407
BceAI ACGGC 3 cut(s) 496, 519, 544
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 648
BisI GCNGC 3 cut(s) 9, 352, 497
BlsI GCNGC 3 cut(s) 10, 353, 498
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 444
BmgBI CACGTC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 229, 367
BmrFI CCNGG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 45, 361
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 587, 662
BseDI CCNNGG 2 cut(s) 45, 361
BseGI GGATG 2 cut(s) 84, 375
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 587, 662
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 2 cut(s) 276, 432
BseXI GCAGC 3 cut(s) 20, 363, 483
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 180, 483
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 291, 363
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 2 cut(s) 180, 483
Bsp1286I GDGCHC 2 cut(s) 276, 432
Bsp143I GATC 3 cut(s) 454, 648, 670
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 159, 467
BspANI GGCC 2 cut(s) 180, 483
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 229, 367
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 2 cut(s) 587, 662
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 45, 361
BssMI GATC 3 cut(s) 454, 648, 670
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 30, 100, 560
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 84, 375
BstKTI GATC 3 cut(s) 457, 651, 673
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 3 cut(s) 454, 648, 670
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 2 cut(s) 276, 432
BstV1I GCAGC 3 cut(s) 20, 363, 483
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BsuRI GGCC 2 cut(s) 180, 483
BtgI CCRYGG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 492
BtsCI GGATG 2 cut(s) 84, 375
BtsIMutI CAGTG 3 cut(s) 96, 556, 669
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 444
Csp6I GTAC 2 cut(s) 31, 250
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 5 cut(s) 46, 151, 380, 394, 476
CviQI GTAC 2 cut(s) 31, 250
DdeI CTNAG 1 cut(s) 73
DpnI GATC 3 cut(s) 456, 650, 672
DpnII GATC 3 cut(s) 454, 648, 670
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 222, 266
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 49, 154, 383, 397, 479
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 5 cut(s) 45, 150, 379, 393, 475
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 9, 352, 497
FokI GGATG 2 cut(s) 71, 362
Fsp4HI GCNGC 3 cut(s) 9, 352, 497
FspBI CTAG 1 cut(s) 269
GluI GCNGC 3 cut(s) 9, 352, 497
HaeIII GGCC 2 cut(s) 180, 483
HapII CCGG 2 cut(s) 291, 363
Hin1II CATG 5 cut(s) 49, 154, 383, 397, 479
HincII GTYRAC 2 cut(s) 472, 526
HindII GTYRAC 2 cut(s) 472, 526
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 291, 363
HphI GGTGA 2 cut(s) 181, 578
Hpy166II GTNNAC 4 cut(s) 33, 274, 472, 526
Hpy188I TCNGA 5 cut(s) 76, 227, 406, 679, 686
Hpy188III TCNNGA 4 cut(s) 172, 200, 389, 458
Hpy8I GTNNAC 4 cut(s) 33, 274, 472, 526
Hpy99I CGWCG 2 cut(s) 496, 530
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 3 cut(s) 30, 100, 560
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 4 cut(s) 8, 274, 351, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 5 cut(s) 49, 154, 383, 397, 479
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 454, 648, 670
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 3 cut(s) 20, 363, 483
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 4 cut(s) 301, 511, 566, 634
MalI GATC 3 cut(s) 456, 650, 672
MboI GATC 3 cut(s) 454, 648, 670
MboII GAAGA 2 cut(s) 178, 583
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 276, 432
MluCI AATT 5 cut(s) 217, 371, 420, 518, 609
MmeI TCCRAC 2 cut(s) 429, 648
MnlI CCTC 4 cut(s) 191, 194, 207, 272
MspI CCGG 2 cut(s) 291, 363
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 363
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 454, 648, 670
NlaIII CATG 5 cut(s) 49, 154, 383, 397, 479
NlaIV GGNNCC 2 cut(s) 229, 367
NmuCI GTSAC 3 cut(s) 301, 566, 634
NspI RCATGY 1 cut(s) 397
PceI AGGCCT 1 cut(s) 180
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 10, 353, 498
PscI ACATGT 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 229, 367
PspPI GGNCC 1 cut(s) 444
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 648
RsaI GTAC 2 cut(s) 32, 251
RsaNI GTAC 2 cut(s) 31, 250
SalI GTCGAC 1 cut(s) 524
SatI GCNGC 3 cut(s) 9, 352, 497
Sau3AI GATC 3 cut(s) 454, 648, 670
Sau96I GGNCC 1 cut(s) 444
ScaI AGTACT 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 2 cut(s) 276, 432
SetI ASST 3 cut(s) 199, 324, 494
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 507
SmoI CTYRAG 1 cut(s) 507
Sse9I AATT 5 cut(s) 217, 371, 420, 518, 609
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 2 cut(s) 159, 467
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 30, 100, 560
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 113, 525
TaqII GACCGA 2 cut(s) 432, 663
TasI AATT 5 cut(s) 217, 371, 420, 518, 609
TatI WGTACW 2 cut(s) 30, 249
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 3 cut(s) 103, 563, 669
TseFI GTSAC 3 cut(s) 301, 566, 634
TseI GCWGC 3 cut(s) 8, 351, 496
Tsp45I GTSAC 3 cut(s) 301, 566, 634
TspDTI ATGAA 6 cut(s) 73, 156, 314, 364, 526, 566
TspGWI ACGGA 2 cut(s) 530, 585
TspRI CASTG 3 cut(s) 103, 563, 669
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.