RchiOBHm_Chr7g0206531

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030529
Physical Location & Seq
Forward (+)
24182072 .. 24182275
204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18483

Sequence Viewer

Length: 204 bp
ATGCATGCTAATGGAAGGAGTACTACTGTGAAAGCCAAGGTTGTTGATGAGTGTGACTCCACAATGGGTTGTGATCTTGTTCATGATTCCCAGCTTCCATGCCCTCACAACATCGTTGATGGCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCTACTGGGTGAAATGCAGATATTCTGGTCTGATGCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.33

Weight (kDa)

6.8

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 3 - 53 1e-16 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030529)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0206531
rosa_samantha Rh7DG236900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 22
AluBI AGCT 3 cut(s) 94, 131, 162
AluI AGCT 3 cut(s) 94, 131, 162
AoxI GGCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 181
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BccI CCATC 1 cut(s) 113
BmcAI AGTACT 1 cut(s) 22
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 36, 144
Bse1I ACTGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 36, 144
BseNI ACTGG 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 143
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 1 cut(s) 143
BspHI TCATGA 1 cut(s) 82
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 36, 144
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 2 cut(s) 36, 144
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 82
Csp6I GTAC 1 cut(s) 21
CviAII CATG 3 cut(s) 5, 83, 99
CviJI RGCY 6 cut(s) 35, 94, 123, 131, 143, 162
CviKI_1 RGCY 6 cut(s) 35, 94, 123, 131, 143, 162
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 36, 144
Eco147I AGGCCT 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 36, 144
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 36, 144
FaeI CATG 3 cut(s) 8, 86, 102
FaiI YATR 3 cut(s) 6, 84, 100
FatI CATG 3 cut(s) 4, 82, 98
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 3 cut(s) 8, 86, 102
HinfI GANTC 2 cut(s) 56, 86
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 9, 133
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 4, 177
Hsp92II CATG 3 cut(s) 8, 86, 102
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 104, 141, 151, 171
LweI GCATC 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MluCI AATT 1 cut(s) 199
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 131
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 8, 86, 102
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 1 cut(s) 82
PceI AGGCCT 1 cut(s) 143
PfeI GAWTC 1 cut(s) 86
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 50
SetI ASST 4 cut(s) 42, 96, 133, 164
SfaNI GCATC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 9
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 199
SseBI AGGCCT 1 cut(s) 143
StuI AGGCCT 1 cut(s) 143
StyI CCWWGG 2 cut(s) 36, 144
TaaI ACNGT 1 cut(s) 28
TasI AATT 1 cut(s) 199
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 71
XceI RCATGY 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.