RchiOBHm_Chr7g0219461

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
37904868 .. 37905459
592 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19641

Sequence Viewer

Length: 339 bp
ATGCTTTTAAGACGTGTAGGCAGGGGCGGATCTAGTATGTACCTGGGGCGGGCTATAGCCCGTCCGAAGATTTTGGACAAAAAAAAAAACCTAGATGTATATATATATATTTTAGTTGGGTATAAGTGTATTGTCTATAATTCCAGCCCGTTCGAGTCGACTAACTCGCCCTTCATCACTTGGTCAGTCCCTCTCCTCCTCAGTCCTCATCAGTCATCACACCGTACAAGTCGATTTAGCTCCCAGGCTCCCAGCCTCCTCCTCCTCGGCTCCTCAATCCTCATCACTTCGATTACGCTCCCAGGCTCCCAGCCTCCTCCTCCTCTGGACCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

10.17

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0399321 RchiOBHm_Chr7g0219461
rosa_samantha Rh4DG086700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 158
AciI CCGC 2 cut(s) 27, 49
AclWI GGATC 1 cut(s) 37
AfaI GTAC 2 cut(s) 41, 226
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 13
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 3 cut(s) 42, 243, 301
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
AlwI GGATC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 328
BciT130I CCWGG 3 cut(s) 44, 245, 303
BfaI CTAG 2 cut(s) 33, 92
BfmI CTRYAG 1 cut(s) 54
Bme1390I CCNGG 3 cut(s) 44, 245, 303
Bme18I GGWCC 1 cut(s) 328
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 3 cut(s) 249, 271, 307
BmrFI CCNGG 3 cut(s) 44, 245, 303
BsaJI CCNNGG 4 cut(s) 43, 243, 265, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseBI CCWGG 3 cut(s) 44, 245, 303
BseDI CCNNGG 4 cut(s) 43, 243, 265, 301
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 214
BseRI GAGGAG 9 cut(s) 185, 188, 248, 251, 254, 262, 306, 309, 312
BseYI CCCAGC 2 cut(s) 251, 309
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 2 cut(s) 27, 49
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 249, 271, 307
BspPI GGATC 1 cut(s) 37
BssECI CCNNGG 4 cut(s) 43, 243, 265, 301
BssMI GATC 1 cut(s) 29
Bst2UI CCWGG 3 cut(s) 44, 245, 303
Bst4CI ACNGT 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstNI CCWGG 3 cut(s) 44, 245, 303
BstSCI CCNGG 3 cut(s) 42, 243, 301
BstSFI CTRYAG 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BtrI CACGTC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 40, 225
CviJI RGCY 9 cut(s) 53, 59, 147, 240, 248, 255, 270, 306, 313
CviKI_1 RGCY 9 cut(s) 53, 59, 147, 240, 248, 255, 270, 306, 313
CviQI GTAC 2 cut(s) 40, 225
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 42, 243, 301
FaiI YATR 9 cut(s) 38, 56, 100, 102, 104, 106, 108, 123, 138
FaqI GGGAC 1 cut(s) 173
FauI CCCGC 1 cut(s) 42
FblI GTMKAC 1 cut(s) 158
FspBI CTAG 2 cut(s) 33, 92
GsaI CCCAGC 2 cut(s) 255, 313
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 13
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 5 cut(s) 245, 253, 275, 303, 311
MaeI CTAG 2 cut(s) 33, 92
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 79, 325
MflI RGATCY 1 cut(s) 29
MluCI AATT 1 cut(s) 139
MlyI GAGTC 1 cut(s) 164
MseI TTAA 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 44, 245, 303
MvaI CCWGG 3 cut(s) 44, 245, 303
NdeII GATC 1 cut(s) 29
NlaIV GGNNCC 3 cut(s) 249, 271, 307
NmeAIII GCCGAG 1 cut(s) 246
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 3 cut(s) 42, 243, 301
PspFI CCCAGC 2 cut(s) 251, 309
PspGI CCWGG 3 cut(s) 42, 243, 301
PspN4I GGNNCC 3 cut(s) 249, 271, 307
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 2 cut(s) 41, 226
RsaNI GTAC 2 cut(s) 40, 225
SalI GTCGAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 44, 245, 303
SetI ASST 5 cut(s) 16, 45, 93, 242, 333
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 328
Sse9I AATT 1 cut(s) 139
SsiI CCGC 2 cut(s) 27, 49
SspMI CTAG 2 cut(s) 33, 92
StyD4I CCNGG 3 cut(s) 42, 243, 301
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 153, 158, 232, 290
TasI AATT 1 cut(s) 139
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 2 cut(s) 33, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.