RchiOBHm_Chr7g0232541

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030465
Physical Location & Seq
Reverse (-)
56649633 .. 56653309
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20843

Sequence Viewer

Length: 606 bp
ATGATTGTGCCTTTTTTTTTTCTCCAAATTCGTAAGCGCTTTACTTTTTTTTCAAAATCTGTTGAGTCAAACTCCAGACAGGGAATTTTTGGTGAGTCCGCATTAATTGGTGAGTCAAACTCCTCAACGGAATTTTTCGACACCAACAAGGAGGCAAAAGTTCTGCTCGCTAAAGAGGCTTATGAGAGGCAAGTTGCTGAATTAAATGCCCTGAAAGAGTCGACAGGGAAAAAGGAATTTGTTGATGCACTCTTCTCATGTGACAATAGGTACAGGAGATACAGTAGGAAGGAAATAGAGATAGCAACAAACTTCTTCTCAGAGACTAATGTGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGCAGTCTTGATCAAACCCCGGTAGCTGTCAAGGTTCTTCGACCTGATGCAGTTGAGAAGAAAGAGGAGTTTCTGAAAGAGGTTGAAATTCTTAGTCAGCTACCAATGCTTGGTGGTTCAAGTGGTAAGGAGCTTGTTCCCCTTAAGCAAGGTCTCGAGTTCGAGCCTTGTGAATGGAGCAGCCAATATTGGGAGTGCTTCCCCCCTAAATGGGGTCCGACCCGGCTCGAGAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr U-box Usp

Protein Analysis

201

Amino Acids

23.04

Weight (kDa)

5.84

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 107 - 156 6.1e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 109 - 156 2.9e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030465)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0232541
rosa_samantha Rh7AG429200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 221
AciI CCGC 1 cut(s) 99
AcsI RAATTY 5 cut(s) 27, 84, 131, 236, 453
AfaI GTAC 1 cut(s) 272
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 5 cut(s) 476, 556, 576, 577, 578
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 3 cut(s) 54, 452, 486
AluBI AGCT 3 cut(s) 392, 466, 499
AluI AGCT 3 cut(s) 392, 466, 499
Alw26I GTCTC 2 cut(s) 317, 524
Ama87I CYCGRG 2 cut(s) 521, 593
Aor51HI AGCGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 5 cut(s) 27, 84, 131, 236, 453
AseI ATTAAT 1 cut(s) 104
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 581
AsuC2I CCSGG 2 cut(s) 386, 589
AsuHPI GGTGA 3 cut(s) 104, 122, 350
AvaI CYCGRG 2 cut(s) 521, 593
AvaII GGWCC 1 cut(s) 581
BbvI GCAGC 1 cut(s) 558
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 2 cut(s) 386, 589
BcoDI GTCTC 2 cut(s) 317, 524
BfoI RGCGCY 1 cut(s) 40
BfrI CTTAAG 1 cut(s) 509
BisI GCNGC 1 cut(s) 547
BlsI GCNGC 1 cut(s) 548
Bme1390I CCNGG 2 cut(s) 386, 589
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 2 cut(s) 521, 593
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 2 cut(s) 386, 589
BmsI GCATC 2 cut(s) 235, 403
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 104, 136
BpmI CTGGAG 1 cut(s) 58
BpuMI CCSGG 2 cut(s) 386, 589
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 5 cut(s) 476, 556, 576, 577, 578
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 5 cut(s) 476, 556, 576, 577, 578
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 112, 446
BseXI GCAGC 1 cut(s) 558
BsgI GTGCAG 1 cut(s) 388
BsiHKCI CYCGRG 2 cut(s) 521, 593
BsiSI CCGG 2 cut(s) 386, 589
BslI CCNNNNNNNGG 5 cut(s) 476, 556, 576, 577, 578
BsmAI GTCTC 2 cut(s) 317, 524
Bso31I GGTCTC 1 cut(s) 524
BsoBI CYCGRG 2 cut(s) 521, 593
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 582
BspTI CTTAAG 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 319, 458
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 2 cut(s) 317, 524
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 176, 472
BstSCI CCNGG 2 cut(s) 384, 587
BstV1I GCAGC 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 258
CviJI RGCY 7 cut(s) 179, 392, 466, 499, 532, 549, 592
CviKI_1 RGCY 7 cut(s) 179, 392, 466, 499, 532, 549, 592
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 319, 458
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 581
Eco47III AGCGCT 1 cut(s) 38
Eco88I CYCGRG 2 cut(s) 521, 593
FaeI CATG 1 cut(s) 261
FaiI YATR 3 cut(s) 183, 259, 351
FatI CATG 1 cut(s) 257
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 547
Fsp4HI GCNGC 1 cut(s) 547
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 547
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 40
HapII CCGG 2 cut(s) 386, 589
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 261
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 65, 95, 113, 218
HpaII CCGG 2 cut(s) 386, 589
HphI GGTGA 3 cut(s) 104, 122, 350
Hpy166II GTNNAC 2 cut(s) 222, 361
Hpy188I TCNGA 3 cut(s) 322, 441, 585
Hpy188III TCNNGA 4 cut(s) 75, 374, 521, 595
Hpy8I GTNNAC 2 cut(s) 222, 361
HpyAV CCTTC 2 cut(s) 283, 335
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 248, 369, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 472
HpyF3I CTNAG 2 cut(s) 319, 458
Hsp92II CATG 1 cut(s) 261
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 496, 543
LpnPI CCDG 8 cut(s) 65, 88, 210, 224, 259, 399, 423, 602
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 2 cut(s) 235, 403
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 4 cut(s) 244, 307, 395, 436
MluCI AATT 8 cut(s) 27, 84, 105, 131, 200, 236, 453, 601
MlyI GAGTC 4 cut(s) 74, 104, 122, 227
MnlI CCTC 8 cut(s) 133, 145, 169, 180, 338, 424, 439, 591
MseI TTAA 3 cut(s) 104, 203, 510
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 2 cut(s) 386, 589
MspR9I CCNGG 2 cut(s) 386, 589
MwoI GCNNNNNNNGC 2 cut(s) 176, 472
NciI CCSGG 2 cut(s) 386, 589
NdeII GATC 1 cut(s) 376
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 260
PaeR7I CTCGAG 2 cut(s) 521, 593
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 548
PleI GAGTC 4 cut(s) 73, 103, 121, 226
PpsI GAGTC 4 cut(s) 73, 103, 121, 226
PshBI ATTAAT 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 581
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 3 cut(s) 104, 203, 510
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 4 cut(s) 74, 104, 122, 227
ScrFI CCNGG 2 cut(s) 386, 589
SetI ASST 8 cut(s) 272, 394, 402, 412, 450, 468, 501, 520
SfaNI GCATC 2 cut(s) 235, 403
Sfr274I CTCGAG 2 cut(s) 521, 593
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 2 cut(s) 521, 593
SmlI CTYRAG 3 cut(s) 509, 521, 593
SmoI CTYRAG 3 cut(s) 509, 521, 593
Sse9I AATT 8 cut(s) 27, 84, 105, 131, 200, 236, 453, 601
SsiI CCGC 1 cut(s) 99
SspI AATATT 1 cut(s) 554
StyD4I CCNGG 2 cut(s) 384, 587
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 6 cut(s) 138, 221, 406, 522, 528, 594
TasI AATT 8 cut(s) 27, 84, 105, 131, 200, 236, 453, 601
Tru1I TTAA 3 cut(s) 104, 203, 510
Tru9I TTAA 3 cut(s) 104, 203, 510
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 1 cut(s) 104
XapI RAATTY 5 cut(s) 27, 84, 131, 236, 453
XhoI CTCGAG 2 cut(s) 521, 593
XmiI GTMKAC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.