Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030440

Physical Location & Seq

Genomic Coordinates Reverse (-)

58322706 .. 58326999

Gene Structure 4294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGACCTATAAACAGCTGGAACAAGAGATTTTGGATTTTTCTGAAGGCCTAAGGATTGTTGGAGTAAAGCCTGTAGAAAAAATTGCACTTTTTGCTGATAATTCTTGTCGTTGGCTTGTTGCAGATCAGGGCATAATGGCCACTGGAGCAATCAATGTGGTACGAGGTTCAAGGTCATCAGTTGAAGAATTGATACAAATATACAATCACTCTGAAAGGTTCAGTAATTGCTCTCCGTTTACTCAAATGTTGTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

86

Amino Acids

9.7

Weight (kDa)

5.24

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	1 - 72	1.3e-13	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0030440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233811
rosa_samantha	Rh4DG167200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	171, 185
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AoxI	GGCC	2 cut(s)	46, 138
AxyI	CCTNAGG	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BfaI	CTAG	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	148
Bse21I	CCTNAGG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	48, 140
BsnI	GGCC	2 cut(s)	48, 140
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	48, 140
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 146
BstSFI	CTRYAG	1 cut(s)	72
Bsu36I	CCTNAGG	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	48, 140
BtsIMutI	CAGTG	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviJI	RGCY	5 cut(s)	16, 48, 70, 115, 140
CviKI_1	RGCY	5 cut(s)	16, 48, 70, 115, 140
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	50
FaiI	YATR	3 cut(s)	9, 134, 202
FspBI	CTAG	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	48, 140
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	43, 214
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	86, 122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 146
HpyF3I	CTNAG	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	4 cut(s)	2, 84, 113, 129
MaeI	CTAG	1 cut(s)	259
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	4 cut(s)	81, 100, 188, 226
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	92, 146
NdeII	GATC	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	124
SetI	ASST	5 cut(s)	8, 18, 169, 176, 221
SfcI	CTRYAG	1 cut(s)	72
SgeI	CNNG	9 cut(s)	29, 35, 83, 117, 128, 140, 156, 176, 183
Sse9I	AATT	4 cut(s)	81, 100, 188, 226
SseBI	AGGCCT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	48
TasI	AATT	4 cut(s)	81, 100, 188, 226
TscAI	CASTG	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	148
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.