RchiOBHm_Chr7g0239261

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
64760492 .. 64761018
527 bp
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UTR
Exon/CDS
Intron
PRQ21440

Sequence Viewer

Length: 258 bp
ATGTCTAAGCTGAAGAATTTGGGTGGAGTAGAAGGTAGGGTGAATACTGTGAAAGGCGTAGCTAATGCATTGTCTTACATGCACCATGATTGCTTGCCAGCAAGGCATAGCTCAAGCAAAAACAATTTGTTAGCTGCCAAATATGAGACCTCTGTCTCCTACTTTGGCACAGCTAAGTTCTTAAAACCAGACTCATCACATTGGACTGGCCTTGTAGGAACATATGGATTTCTTGCACCAGTTTTAATTCCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

85

Amino Acids

9.16

Weight (kDa)

9.61

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030435)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0239261
rosa_multiflora Rmu_sc0003207.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 32
AluBI AGCT 5 cut(s) 10, 62, 111, 134, 173
AluI AGCT 5 cut(s) 10, 62, 111, 134, 173
Alw26I GTCTC 2 cut(s) 140, 160
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 52
BbvI GCAGC 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 140, 160
BglI GCCNNNNNGGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 211, 239
BseNI ACTGG 2 cut(s) 211, 239
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 140, 160
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 140
BspANI GGCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 2 cut(s) 211, 239
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 95, 99
BstDEI CTNAG 2 cut(s) 6, 174
BstMAI GTCTC 2 cut(s) 140, 160
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 82
BstPAI GACNNNNGTC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 95, 99
CviAII CATG 2 cut(s) 79, 86
CviJI RGCY 6 cut(s) 10, 62, 111, 134, 173, 210
CviKI_1 RGCY 6 cut(s) 10, 62, 111, 134, 173, 210
DdeI CTNAG 2 cut(s) 6, 174
Eco31I GGTCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 70
FaeI CATG 2 cut(s) 82, 89
FaiI YATR 6 cut(s) 80, 87, 108, 144, 223, 225
FatI CATG 2 cut(s) 78, 85
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 210
Hin1II CATG 2 cut(s) 82, 89
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 68, 82, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 6, 174
Hsp92II CATG 2 cut(s) 82, 89
LpnPI CCDG 4 cut(s) 111, 192, 201, 252
Lsp1109I GCAGC 1 cut(s) 121
MboII GAAGA 1 cut(s) 25
MluCI AATT 3 cut(s) 16, 124, 246
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 1 cut(s) 160
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 2 cut(s) 182, 245
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeI CATATG 1 cut(s) 223
NlaIII CATG 2 cut(s) 82, 89
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 1 cut(s) 82
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 182, 245
SatI GCNGC 1 cut(s) 135
SchI GAGTC 1 cut(s) 185
SetI ASST 7 cut(s) 12, 37, 64, 113, 136, 152, 175
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 3 cut(s) 16, 124, 246
TaaI ACNGT 1 cut(s) 49
TasI AATT 3 cut(s) 16, 124, 246
Tru1I TTAA 2 cut(s) 182, 245
Tru9I TTAA 2 cut(s) 182, 245
TseI GCWGC 1 cut(s) 134
XapI RAATTY 1 cut(s) 16
XceI RCATGY 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.