RchiOBHm_Chr7g0240761

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030458
Physical Location & Seq
Reverse (-)
66765643 .. 66766171
529 bp
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UTR
Exon/CDS
Intron
PRQ21577

Sequence Viewer

Length: 168 bp
ATGGCTTCAACACCTCGAAGAACCGGTGGAGGCCTCTTCGAAGGCCTCTATAGGGTCATCATGCGCCGTAACTCCATCTACATCACCTTCGTCATCGCCGGCGCTTTCCTTGGTGAACGGGTGGGTCAGCCTTACATTAGGGTTTCTTCACTTAACCAATTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

55

Amino Acids

6.17

Weight (kDa)

10.81

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 41 2e-08 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030458)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0240761
rosa_rugosa Rorug07G0338600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 9
AoxI GGCC 2 cut(s) 31, 43
AsiGI ACCGGT 1 cut(s) 23
AspLEI GCGC 2 cut(s) 66, 104
AsuHPI GGTGA 2 cut(s) 76, 125
AsuII TTCGAA 1 cut(s) 39
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 2 cut(s) 23, 98
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 52
BshFI GGCC 2 cut(s) 33, 45
BshTI ACCGGT 1 cut(s) 23
BsiSI CCGG 2 cut(s) 24, 99
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 2 cut(s) 33, 45
Bsp119I TTCGAA 1 cut(s) 39
BspANI GGCC 2 cut(s) 33, 45
BspT104I TTCGAA 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 23, 98
BssAI RCCGGY 2 cut(s) 23, 98
BssECI CCNNGG 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 66, 104
BstSFI CTRYAG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 33, 45
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 66, 104
Cfr10I RCCGGY 2 cut(s) 23, 98
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 5, 33, 45, 130
CviKI_1 RGCY 4 cut(s) 5, 33, 45, 130
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 109
Eco147I AGGCCT 2 cut(s) 33, 45
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 51, 62
FatI CATG 1 cut(s) 60
GlaI GCGC 2 cut(s) 65, 103
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 33, 45
HapII CCGG 2 cut(s) 24, 99
HhaI GCGC 2 cut(s) 66, 104
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 64, 102
HinP1I GCGC 2 cut(s) 64, 102
HpaII CCGG 2 cut(s) 24, 99
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 35, 97
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 64, 102
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 37, 112
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 3 cut(s) 28, 30, 138
MluCI AATT 1 cut(s) 158
MnlI CCTC 4 cut(s) 23, 24, 44, 56
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MseI TTAA 1 cut(s) 153
MspI CCGG 2 cut(s) 24, 99
NaeI GCCGGC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 2 cut(s) 33, 45
PdiI GCCGGC 1 cut(s) 100
PinAI ACCGGT 1 cut(s) 23
SaqAI TTAA 1 cut(s) 153
SetI ASST 2 cut(s) 16, 89
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 6 cut(s) 27, 36, 73, 111, 122, 131
SgrAI CRCCGGYG 1 cut(s) 98
Sse9I AATT 1 cut(s) 158
SseBI AGGCCT 2 cut(s) 33, 45
StuI AGGCCT 2 cut(s) 33, 45
StyI CCWWGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 16, 39
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.