RchiOBHm_Chr7g0242091

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030542
Physical Location & Seq
Forward (+)
68236095 .. 68237413
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21697

Sequence Viewer

Length: 513 bp
ATGTATAGCAACGCGGGGATAACCAGCTCGTCTGCGCAGACAGTGCTGGAGCTCGACCTGTCCGGGTACAACAGCGTGATGGCAGCGTGTGTGAAGCACCCAACACTTGCGATGGTGGGGAAGGAGGTGAAGGGAAGCATAGTGTGCACAGCGAGCTTCATGGAGGACTACAGGACGGAGAACATGACTGACTGCACGATGTCGAAGCACACGATGCTGGGGCTGGTGAGGTCAGCGAACATGCAGCTAGTGCGGCGTGGTGTGTGCGTGAACTGCGTGTCGCCGGGTATGGTGGCGACGCCGCTGATGTGCGACATATTAAAGATTAGTGAGGAAGAGCTGTGGGAGACGATGGCGGTGGTTTATTCGGGAAGGGATGAACAGCTGATGGAGAAGCACGTGGCGGATGCGGTGGTGTTTTTGGCTTGTGAGGACTCGGCGTTCGTCACCGATCATAATTTGGTTGTTAATGGTGGACTCGGCACCAAGTCCATAGCTATATTGAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

170

Amino Acids

18.39

Weight (kDa)

5.14

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 4 - 103 3.4e-11 short chain dehydrogenase
adh_short_C2 PF13561 8 - 160 1.1e-20 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030542)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0242091
rosa_samantha Rh7AG469000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 482
AccII CGCG 1 cut(s) 14
AciI CCGC 6 cut(s) 14, 253, 302, 356, 404, 410
AcvI CACGTG 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 505
AloI GAACNNNNNNTCC 2 cut(s) 425, 457
AluBI AGCT 7 cut(s) 27, 52, 156, 247, 340, 385, 497
AluI AGCT 7 cut(s) 27, 52, 156, 247, 340, 385, 497
Alw21I GWGCWC 2 cut(s) 54, 149
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 145
ApaLI GTGCAC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 83, 244
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 64, 285
AsuHPI GGTGA 3 cut(s) 139, 238, 439
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 400
Bbv12I GWGCWC 2 cut(s) 54, 149
BbvI GCAGC 2 cut(s) 95, 256
BccI CCATC 4 cut(s) 73, 106, 346, 382
BcnI CCSGG 2 cut(s) 64, 285
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 4 cut(s) 84, 245, 254, 302
BlsI GCNGC 4 cut(s) 85, 246, 255, 303
Bme1390I CCNGG 2 cut(s) 64, 285
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 2 cut(s) 64, 285
BmsI GCATC 2 cut(s) 204, 397
BpmI CTGGAG 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 64, 285
BsaAI YACGTR 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 299
BseGI GGATG 2 cut(s) 382, 412
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 95, 256
BseYI CCCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 2 cut(s) 54, 149
BsiSI CCGG 2 cut(s) 63, 284
BsmAI GTCTC 1 cut(s) 341
BsmBI CGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 54, 149
Bsp143I GATC 1 cut(s) 451
BspACI CCGC 6 cut(s) 14, 253, 302, 356, 404, 410
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 484
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 482
BssMI GATC 1 cut(s) 451
BssNI GRCGYC 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 4 cut(s) 43, 144, 214, 250
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 154
BstF5I GGATG 2 cut(s) 382, 412
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 7 cut(s) 43, 144, 153, 214, 250, 253, 273
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 62, 283
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 95, 256
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 2 cut(s) 382, 412
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 37
CseI GACGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 67
CviAII CATG 3 cut(s) 160, 184, 241
CviJI RGCY 9 cut(s) 27, 52, 156, 223, 247, 340, 385, 425, 497
CviKI_1 RGCY 9 cut(s) 27, 52, 156, 223, 247, 340, 385, 425, 497
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco72I CACGTG 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 3 cut(s) 163, 187, 244
FatI CATG 3 cut(s) 159, 183, 240
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 84, 245, 254, 302
FokI GGATG 2 cut(s) 389, 419
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 4 cut(s) 84, 245, 254, 302
FspBI CTAG 1 cut(s) 248
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 1 cut(s) 36
GluI GCNGC 4 cut(s) 84, 245, 254, 302
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 2 cut(s) 63, 284
HgaI GACGC 1 cut(s) 307
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 3 cut(s) 163, 187, 244
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 2 cut(s) 434, 477
HpaII CCGG 2 cut(s) 63, 284
HphI GGTGA 3 cut(s) 139, 238, 439
Hpy166II GTNNAC 3 cut(s) 147, 271, 476
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 3 cut(s) 147, 271, 476
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 115, 124, 366
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 147, 195, 244
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 144, 153, 214, 250, 253, 273
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 3 cut(s) 163, 187, 244
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 451
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 8 cut(s) 32, 37, 71, 76, 157, 203, 209, 297
Lsp1109I GCAGC 2 cut(s) 95, 256
LweI GCATC 2 cut(s) 204, 397
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 54, 149
MluCI AATT 1 cut(s) 457
MlyI GAGTC 2 cut(s) 428, 471
MnlI CCTC 5 cut(s) 118, 157, 222, 325, 424
MseI TTAA 2 cut(s) 320, 468
MspA1I CMGCKG 2 cut(s) 304, 385
MspI CCGG 2 cut(s) 63, 284
MspR9I CCNGG 2 cut(s) 64, 285
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 7 cut(s) 43, 144, 153, 214, 250, 253, 273
NciI CCSGG 2 cut(s) 64, 285
NdeII GATC 1 cut(s) 451
NlaIII CATG 3 cut(s) 163, 187, 244
NlaIV GGNNCC 1 cut(s) 484
NmeAIII GCCGAG 2 cut(s) 416, 459
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 36
NspI RCATGY 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PkrI GCNGC 4 cut(s) 85, 246, 255, 303
PleI GAGTC 2 cut(s) 428, 471
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 2 cut(s) 428, 471
Ppu21I YACGTR 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 54
PspCI CACGTG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 320, 468
SatI GCNGC 4 cut(s) 84, 245, 254, 302
Sau3AI GATC 1 cut(s) 451
SchI GAGTC 2 cut(s) 428, 471
ScrFI CCNGG 2 cut(s) 64, 285
SduI GDGCHC 2 cut(s) 54, 149
SfaNI GCATC 2 cut(s) 204, 397
SfcI CTRYAG 1 cut(s) 169
Sse9I AATT 1 cut(s) 457
SsiI CCGC 6 cut(s) 14, 253, 302, 356, 404, 410
SspMI CTAG 1 cut(s) 248
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 62, 283
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 54, 203
TasI AATT 1 cut(s) 457
TauI GCSGC 2 cut(s) 256, 304
Tru1I TTAA 2 cut(s) 320, 468
Tru9I TTAA 2 cut(s) 320, 468
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 83, 244
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 148, 393
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 48
VneI GTGCAC 1 cut(s) 145
XceI RCATGY 1 cut(s) 244
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.