RchiOBHm_Chr7g0242861
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0025142
Physical Location & Seq
Reverse (-)
69202083 .. 69202943
861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21764

Sequence Viewer

Length: 861 bp
ATGCGCATTATCAATGAACCGACAGCTGCGGCAATTGCTTATGGCCTTGAGAAACAGGCTGGTTGGTATGGGAAGAGAAATGTGATGATATTCGATTTGGGTGGTGGCACATTAGATGTATCACTACTTACCATAGGGGATGGTGTCTTCGAAGTGAAGGCCACTGCTGGAGACACGCATCTTGGAGGTGAAGACATCGATAACAGTATGGTAAACTATTGTGTCGATCAATTCAAGTCAAAGCATAATTTGGATGTCAGTGAAAATCCCAAGGCTCTTAGGAGGTTAAGAAATGCTTGTGAGAAGGCAAAAAGGAGACTTTCATTTACGTCCACGATTGACCTTGAAGTTGACTGCTTGGATCGAGGTACTGATTTCTTTATAACAATTACTCGTGCTAAATTTGAACAAATGAACATGGATTTCTTCAACAAATGCATGGAGCCGGTGGACAAGTGTTTGAGGGATGCTGATATAGAGATAACTAATTTTCATGACGTAGTTCTTGCTGGTGGCTCTTCTAGAATTCCCAAGGTGCAGGAACTATTACGGAATGTCTTCAAGGGGATGAAGCTGTGCCAGAGTATTAATCCGGATGAAGCGGTTGCTCATGGAGCTGCTGTTCGTGCTGCACTCTTGAGTGGGAGAGGAGATGGTAAACTGCAAGACTTCACTCTAGTAGATGCTACCCCTGTCTCACCTGGAGTGGAGGTTTTCCACAATCGCATGAAAATTGTGATTCCAAGAAACACCAAAGTTCCTGTAGTTAAGAACTGCAGATTGACTACTCGGCATGACAACCAAGATAATGTCAGCTTCGCCATTTATGAGGGTGAGACCGTGAGAGTGAAAGCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

286

Amino Acids

31.73

Weight (kDa)

7.0

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 282 1.4e-100 Hsp70 protein
MreB_Mbl PF06723 3 - 207 1.8e-12 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025142)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0242861
rosa_rugosa Rorug01G0331500.1
rosa_samantha Rh7AG472900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc16I TGCGCA 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 2 cut(s) 29, 602
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 401, 525
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 5 cut(s) 235, 347, 407, 430, 562
AjnI CCWGG 1 cut(s) 700
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 4 cut(s) 26, 574, 617, 816
AluI AGCT 4 cut(s) 26, 574, 617, 816
Alw26I GTCTC 4 cut(s) 165, 310, 700, 830
AlwI GGATC 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 2 cut(s) 43, 159
ApeKI GCWGC 3 cut(s) 26, 617, 629
ApoI RAATTY 2 cut(s) 401, 525
AseI ATTAAT 1 cut(s) 588
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 200, 690, 845
AsuII TTCGAA 1 cut(s) 150
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 3 cut(s) 139, 198, 550
BbvI GCAGC 3 cut(s) 13, 604, 616
BccI CCATC 2 cut(s) 134, 647
BciT130I CCWGG 1 cut(s) 702
BcoDI GTCTC 4 cut(s) 165, 310, 700, 830
BfaI CTAG 2 cut(s) 522, 677
BfmI CTRYAG 2 cut(s) 762, 775
BisI GCNGC 4 cut(s) 27, 30, 618, 630
BlsI GCNGC 4 cut(s) 28, 31, 619, 631
Bme1390I CCNGG 1 cut(s) 702
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 3 cut(s) 187, 457, 673
BpiI GAAGAC 3 cut(s) 139, 198, 550
BpmI CTGGAG 2 cut(s) 189, 723
Bpu14I TTCGAA 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 68, 658
Bsa29I ATCGAT 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 270, 531
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 4 cut(s) 606, 636, 696, 726
Bse118I RCCGGY 1 cut(s) 445
BseAI TCCGGA 1 cut(s) 592
BseBI CCWGG 1 cut(s) 702
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 270, 531
BseGI GGATG 5 cut(s) 145, 259, 472, 573, 601
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 3 cut(s) 13, 604, 616
BsgI GTGCAG 2 cut(s) 557, 615
BshFI GGCC 2 cut(s) 45, 161
BshVI ATCGAT 1 cut(s) 198
BsiSI CCGG 2 cut(s) 446, 593
BsmAI GTCTC 4 cut(s) 165, 310, 700, 830
BsnI GGCC 2 cut(s) 45, 161
Bso31I GGTCTC 1 cut(s) 830
Bsp119I TTCGAA 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 2 cut(s) 226, 361
BspACI CCGC 2 cut(s) 29, 602
BspANI GGCC 2 cut(s) 45, 161
BspDI ATCGAT 1 cut(s) 198
BspEI TCCGGA 1 cut(s) 592
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 444
BspMAI CTGCAG 1 cut(s) 779
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 523
BspT104I TTCGAA 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 270, 531
BssMI GATC 2 cut(s) 226, 361
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 270, 531
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 206, 841
Bst6I CTCTTC 2 cut(s) 68, 523
BstBI TTCGAA 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 5 cut(s) 145, 259, 472, 573, 601
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 229, 364
BstMAI GTCTC 4 cut(s) 165, 310, 700, 830
BstMBI GATC 2 cut(s) 226, 361
BstMWI GCNNNNNNNGC 3 cut(s) 35, 614, 626
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 1 cut(s) 700
BstSFI CTRYAG 2 cut(s) 762, 775
BstV1I GCAGC 3 cut(s) 13, 604, 616
BstV2I GAAGAC 3 cut(s) 139, 198, 550
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 2 cut(s) 45, 161
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 5 cut(s) 145, 259, 472, 573, 601
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 265
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 369
CviAII CATG 6 cut(s) 418, 439, 494, 611, 727, 794
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 228, 363
DpnII GATC 2 cut(s) 226, 361
Eam1104I CTCTTC 2 cut(s) 68, 523
EarI CTCTTC 2 cut(s) 68, 523
Eco130I CCWWGG 2 cut(s) 270, 531
Eco31I GGTCTC 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 270, 531
EcoT22I ATGCAT 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 270, 531
FaeI CATG 6 cut(s) 421, 442, 497, 614, 730, 797
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 6 cut(s) 417, 438, 493, 610, 726, 793
Fnu4HI GCNGC 4 cut(s) 27, 30, 618, 630
FokI GGATG 5 cut(s) 152, 266, 479, 580, 608
Fsp4HI GCNGC 4 cut(s) 27, 30, 618, 630
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 522, 677
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 4 cut(s) 27, 30, 618, 630
GsuI CTGGAG 2 cut(s) 189, 723
HaeIII GGCC 2 cut(s) 45, 161
HapII CCGG 2 cut(s) 446, 593
HhaI GCGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 421, 442, 497, 614, 730, 797
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 739
HpaII CCGG 2 cut(s) 446, 593
HphI GGTGA 3 cut(s) 200, 690, 845
Hpy166II GTNNAC 5 cut(s) 214, 333, 352, 451, 659
Hpy188III TCNNGA 4 cut(s) 494, 522, 593, 637
Hpy8I GTNNAC 5 cut(s) 214, 333, 352, 451, 659
HpyAV CCTTC 2 cut(s) 151, 298
HpyCH4III ACNGT 2 cut(s) 206, 841
HpyCH4IV ACGT 2 cut(s) 329, 498
HpyCH4V TGCA 5 cut(s) 438, 538, 632, 664, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 614, 626
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 2 cut(s) 329, 498
Hsp92II CATG 6 cut(s) 421, 442, 497, 614, 730, 797
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 226, 361
LguI GCTCTTC 1 cut(s) 523
LmnI GCTCC 2 cut(s) 442, 614
Lsp1109I GCAGC 3 cut(s) 13, 604, 616
LweI GCATC 3 cut(s) 187, 457, 673
MaeI CTAG 2 cut(s) 522, 677
MaeII ACGT 2 cut(s) 329, 498
MalI GATC 2 cut(s) 228, 363
MboI GATC 2 cut(s) 226, 361
MboII GAAGA 6 cut(s) 85, 139, 203, 418, 510, 550
MfeI CAATTG 1 cut(s) 33
MluCI AATT 8 cut(s) 33, 230, 247, 387, 401, 487, 525, 732
MnlI CCTC 7 cut(s) 179, 276, 359, 456, 641, 703, 823
Mph1103I ATGCAT 1 cut(s) 440
MroI TCCGGA 1 cut(s) 592
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 3 cut(s) 287, 588, 768
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 446, 593
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 3 cut(s) 35, 614, 626
NdeII GATC 2 cut(s) 226, 361
NlaIII CATG 6 cut(s) 421, 442, 497, 614, 730, 797
NlaIV GGNNCC 1 cut(s) 444
NmeAIII GCCGAG 1 cut(s) 769
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 440
NspV TTCGAA 1 cut(s) 150
PagI TCATGA 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 4 cut(s) 28, 31, 619, 631
PshBI ATTAAT 1 cut(s) 588
PsiI TTATAA 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 444
PstI CTGCAG 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 523
SaqAI TTAA 3 cut(s) 287, 588, 768
SatI GCNGC 4 cut(s) 27, 30, 618, 630
Sau3AI GATC 2 cut(s) 226, 361
ScrFI CCNGG 1 cut(s) 702
SfaNI GCATC 3 cut(s) 187, 457, 673
SfcI CTRYAG 2 cut(s) 762, 775
SfuI TTCGAA 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 47, 637
SmoI CTYRAG 2 cut(s) 47, 637
Sse9I AATT 8 cut(s) 33, 230, 247, 387, 401, 487, 525, 732
SsiI CCGC 2 cut(s) 29, 602
SspMI CTAG 2 cut(s) 522, 677
StyD4I CCNGG 1 cut(s) 700
StyI CCWWGG 2 cut(s) 270, 531
TaaI ACNGT 2 cut(s) 206, 841
TaiI ACGT 2 cut(s) 332, 501
TaqI TCGA 5 cut(s) 93, 150, 198, 225, 364
TasI AATT 8 cut(s) 33, 230, 247, 387, 401, 487, 525, 732
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 3 cut(s) 287, 588, 768
Tru9I TTAA 3 cut(s) 287, 588, 768
TscAI CASTG 2 cut(s) 169, 265
TseI GCWGC 3 cut(s) 26, 617, 629
TspDTI ATGAA 7 cut(s) 30, 312, 428, 482, 584, 612, 743
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 2 cut(s) 169, 265
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 2 cut(s) 401, 525
XbaI TCTAGA 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 2 cut(s) 522, 677
Zsp2I ATGCAT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.