RLG00000000499

PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
1235822 .. 1236701
880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000499

Sequence Viewer

Length: 741 bp
ATGAGCGCGTTAGGGCGTCCCCAAGATATGTTTTCAGATACCGCTATACAATTACAGCCCGTCTTTGATCAATGGATACAAAACACCCACGCTTTAGCACCCGGTGCAACGGCCCCTGGTGCAACAACAAGCACCAGTTTTACTTGGGGAGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTTGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTGGTACATCACATTCATGCATTTACAATTCATGTGACGGTATTGATACTCCCGAAAGGCGTTCTATTTGCTCGTAGTTCGCGTTTGATACCAGATAAAGCAAATCTTGGTTTTCGTTTTCCTTGTGATGGACCCGGAGGGGGGGGGGGACATGCCAATTGGAAAATGCAATCAGATGTTTGGGGTAGTATAAGTGATCAAGGAGTGGTAACTCATATCACGGGAGGAAACTTTGCGCAGAGTTCCATTACTATTAATGGGTGGCTCCGCGATTTCTTATGGGCACAGGCATCCCAAGTAATTCAGTCCTACGGTTCTTCATTATCTGCCGGACGTGGTTATTGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGTATTGTCCAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTATTGCAGTAGGATAA

Protein Analysis

247

Amino Acids

26.14

Weight (kDa)

9.25

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaA_PsaB PF00223 1 - 123 9.4e-44 Photosystem I psaA/psaB protein
PsaA_PsaB PF00223 124 - 180 7.8e-14 Photosystem I psaA/psaB protein
PsaA_PsaB PF00223 181 - 240 1e-26 Photosystem I psaA/psaB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021316)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 456
AccB7I CCANNNNNTGG 2 cut(s) 588, 702
AccII CGCG 3 cut(s) 8, 301, 489
AciI CCGC 4 cut(s) 42, 174, 210, 487
AcyI GRCGYC 1 cut(s) 16
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 5 cut(s) 347, 359, 360, 588, 702
AgsI TTSAA 1 cut(s) 578
AjiI CACGTC 2 cut(s) 554, 656
AjnI CCWGG 1 cut(s) 115
AoxI GGCC 1 cut(s) 111
AseI ATTAAT 1 cut(s) 474
AspLEI GCGC 2 cut(s) 8, 457
AspS9I GGNCC 2 cut(s) 112, 350
AsuC2I CCSGG 2 cut(s) 102, 354
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 595
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 2 cut(s) 67, 415
BcnI CCSGG 2 cut(s) 102, 354
BfaI CTAG 1 cut(s) 630
BfmI CTRYAG 1 cut(s) 660
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 102, 117, 354
Bme18I GGWCC 1 cut(s) 350
BmgBI CACGTC 2 cut(s) 554, 656
BmgT120I GGNCC 2 cut(s) 112, 350
BmiI GGNNCC 4 cut(s) 114, 208, 352, 485
BmrFI CCNGG 3 cut(s) 102, 117, 354
BmsI GCATC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 658
BpuMI CCSGG 2 cut(s) 102, 354
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 115, 649
Bsc4I CCNNNNNNNGG 5 cut(s) 347, 359, 360, 588, 702
Bse1I ACTGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 115, 649
BseGI GGATG 1 cut(s) 509
BseLI CCNNNNNNNGG 5 cut(s) 347, 359, 360, 588, 702
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 505
Bsh1236I CGCG 3 cut(s) 8, 301, 489
BshFI GGCC 1 cut(s) 113
BsiSI CCGG 3 cut(s) 102, 354, 549
BslFI GGGAC 2 cut(s) 3, 381
BslI CCNNNNNNNGG 5 cut(s) 347, 359, 360, 588, 702
BsmFI GGGAC 2 cut(s) 3, 381
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 505, 595
Bsp143I GATC 2 cut(s) 67, 415
BspACI CCGC 4 cut(s) 42, 174, 210, 487
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 637
BspFNI CGCG 3 cut(s) 8, 301, 489
BspLI GGNNCC 4 cut(s) 114, 208, 352, 485
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 115, 649
BssMI GATC 2 cut(s) 67, 415
BssNI GRCGYC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 259, 533
BstACI GRCGYC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 624, 715
BstF5I GGATG 1 cut(s) 509
BstFNI CGCG 3 cut(s) 8, 301, 489
BstHHI GCGC 2 cut(s) 8, 457
BstKTI GATC 2 cut(s) 70, 418
BstMBI GATC 2 cut(s) 67, 415
BstMWI GCNNNNNNNGC 2 cut(s) 104, 119
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 100, 115, 352
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 3 cut(s) 8, 301, 489
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 113
BtrI CACGTC 2 cut(s) 554, 656
BtsCI GGATG 1 cut(s) 509
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
CfoI GCGC 2 cut(s) 8, 457
Cfr13I GGNCC 2 cut(s) 112, 350
CseI GACGC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 224
CviAII CATG 4 cut(s) 236, 251, 371, 702
CviJI RGCY 6 cut(s) 58, 113, 484, 593, 628, 635
CviKI_1 RGCY 6 cut(s) 58, 113, 484, 593, 628, 635
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 624, 715
DpnI GATC 2 cut(s) 69, 417
DpnII GATC 2 cut(s) 67, 415
DraIII CACNNNGTG 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 4 cut(s) 239, 254, 374, 705
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 3, 381
FatI CATG 4 cut(s) 235, 250, 370, 701
FbaI TGATCA 2 cut(s) 67, 415
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 630
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 2 cut(s) 7, 456
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 113
HapII CCGG 3 cut(s) 102, 354, 549
HgaI GACGC 1 cut(s) 5
HhaI GCGC 2 cut(s) 8, 457
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 4 cut(s) 239, 254, 374, 705
Hin6I GCGC 2 cut(s) 6, 455
HinP1I GCGC 2 cut(s) 6, 455
HinfI GANTC 1 cut(s) 578
HpaII CCGG 3 cut(s) 102, 354, 549
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 37, 394
Hpy188III TCNNGA 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 689
HpyCH4III ACNGT 2 cut(s) 259, 533
HpyCH4IV ACGT 2 cut(s) 553, 655
HpyCH4V TGCA 5 cut(s) 107, 122, 239, 388, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 119
HpyF3I CTNAG 2 cut(s) 624, 715
HpySE526I ACGT 2 cut(s) 553, 655
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 4 cut(s) 239, 254, 374, 705
HspAI GCGC 2 cut(s) 6, 455
Ksp22I TGATCA 2 cut(s) 67, 415
Kzo9I GATC 2 cut(s) 67, 415
LmnI GCTCC 2 cut(s) 489, 619
LweI GCATC 1 cut(s) 518
MaeI CTAG 1 cut(s) 630
MaeII ACGT 2 cut(s) 553, 655
MaeIII GTNAC 4 cut(s) 189, 253, 427, 667
MalI GATC 2 cut(s) 69, 417
MboI GATC 2 cut(s) 67, 415
MboII GAAGA 2 cut(s) 528, 703
MfeI CAATTG 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 505, 595
MluCI AATT 7 cut(s) 50, 246, 376, 519, 602, 690, 723
MnlI CCTC 3 cut(s) 143, 350, 437
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 2 cut(s) 474, 605
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 3 cut(s) 102, 354, 549
MspR9I CCNGG 3 cut(s) 102, 117, 354
MunI CAATTG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 3 cut(s) 8, 301, 489
MwoI GCNNNNNNNGC 2 cut(s) 104, 119
NciI CCSGG 2 cut(s) 102, 354
NdeII GATC 2 cut(s) 67, 415
NlaIII CATG 4 cut(s) 239, 254, 374, 705
NlaIV GGNNCC 4 cut(s) 114, 208, 352, 485
NmuCI GTSAC 1 cut(s) 253
NsbI TGCGCA 1 cut(s) 456
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PfeI GAWTC 1 cut(s) 578
PflMI CCANNNNNTGG 2 cut(s) 588, 702
PkrI GCNGC 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 4 cut(s) 114, 208, 352, 485
PspPI GGNCC 2 cut(s) 112, 350
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 474, 605
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 67, 415
Sau96I GGNCC 2 cut(s) 112, 350
ScrFI CCNGG 3 cut(s) 102, 117, 354
SduI GDGCHC 2 cut(s) 505, 595
SetI ASST 5 cut(s) 154, 196, 556, 658, 681
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 7 cut(s) 50, 246, 376, 519, 602, 690, 723
SsiI CCGC 4 cut(s) 42, 174, 210, 487
SspMI CTAG 1 cut(s) 630
StyD4I CCNGG 3 cut(s) 100, 115, 352
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 259, 533
TaiI ACGT 2 cut(s) 556, 658
TasI AATT 7 cut(s) 50, 246, 376, 519, 602, 690, 723
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 2 cut(s) 474, 605
Tru9I TTAA 2 cut(s) 474, 605
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 224, 239, 528
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 2 cut(s) 588, 702
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 1 cut(s) 474
XceI RCATGY 1 cut(s) 374
XspI CTAG 1 cut(s) 630
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.