Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0030587

Physical Location & Seq

Genomic Coordinates Forward (+)

14131468 .. 14132026

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTGCTGAGGGGGTATGAGCTCATGCCATATGGTAGCCTTAACATGCATCCTGCTCGACAGAAGCTTCAACTCGATTGTCGTCCTATCCTGGAAGCAAAGAGCAGCTACCAATACCAGCCAGAACGATGGAGTATCTTGCCCCTGAATACACTTACTGAGGATTGGGGTGGTGATGTTAGAGGTGTCAATGGTTTATATCCACTGGAGGATGATGGAACAGTGGTTGTTGATTTGTGCTTGGGGCTGTTTGAAATGGGGAAACTGATTGAAGCTGCTGATTCAAGACTCCTTGGTAAGTTTGACAAGGTAGGGATGGAACGGAAGCTGATGAGTGGGCTTGGTTCATTGCTTATGTGCACCGAAACCATGTGGAGAGGTCAACAGTTAAGGATGCCGTTAGGATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.34

Weight (kDa)

5.41

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030587)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001325
rosa_roxburghii	Rroxscaffold_3G00228210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	71, 254, 272, 285
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	22, 67, 108, 275, 328
AluI	AGCT	5 cut(s)	22, 67, 108, 275, 328
Alw21I	GWGCWC	2 cut(s)	24, 362
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	399
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	105, 275
AsuHPI	GGTGA	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	24, 362
BbvCI	CCTCAGC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	117, 262
BccI	CCATC	3 cut(s)	123, 209, 310
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	106, 276
BlsI	GCNGC	2 cut(s)	107, 277
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	58, 384
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	4 cut(s)	49, 217, 321, 399
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	117, 262
BsiHKAI	GWGCWC	2 cut(s)	24, 362
Bsp1286I	GDGCHC	2 cut(s)	24, 362
Bsp143I	GATC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	223, 387
BstDEI	CTNAG	2 cut(s)	8, 159
BstF5I	GGATG	4 cut(s)	49, 217, 321, 399
BstKTI	GATC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	117, 262
BstX2I	RGATCY	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	404
BtsCI	GGATG	4 cut(s)	49, 217, 321, 399
BtsIMutI	CAGTG	2 cut(s)	203, 228
CviAII	CATG	3 cut(s)	25, 46, 370
CviJI	RGCY	9 cut(s)	22, 39, 67, 108, 121, 247, 275, 328, 340
CviKI_1	RGCY	9 cut(s)	22, 39, 67, 108, 121, 247, 275, 328, 340
DdeI	CTNAG	2 cut(s)	8, 159
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	3 cut(s)	28, 49, 373
FaiI	YATR	8 cut(s)	18, 26, 31, 33, 47, 199, 356, 371
FatI	CATG	3 cut(s)	24, 45, 369
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	106, 276
FokI	GGATG	4 cut(s)	36, 224, 328, 406
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	106, 276
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	2 cut(s)	106, 276
GsuI	CTGGAG	1 cut(s)	227
Hin1II	CATG	3 cut(s)	28, 49, 373
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	281, 288
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	360, 383
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	360, 383
HpyCH4III	ACNGT	2 cut(s)	223, 387
HpyCH4V	TGCA	2 cut(s)	49, 360
HpyF3I	CTNAG	2 cut(s)	8, 159
Hsp92II	CATG	3 cut(s)	28, 49, 373
Kzo9I	GATC	1 cut(s)	404
LpnPI	CCDG	7 cut(s)	66, 77, 104, 131, 135, 158, 191
Lsp1109I	GCAGC	2 cut(s)	117, 262
LweI	GCATC	2 cut(s)	58, 384
MaeI	CTAG	1 cut(s)	409
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	24, 362
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	3, 154, 176, 202, 371
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	2 cut(s)	42, 389
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	3 cut(s)	28, 49, 373
NlaIV	GGNNCC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	107, 277
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	42, 389
SatI	GCNGC	2 cut(s)	106, 276
Sau3AI	GATC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	24, 362
SetI	ASST	8 cut(s)	24, 69, 110, 187, 277, 312, 330, 382
SfaNI	GCATC	2 cut(s)	58, 384
SspMI	CTAG	1 cut(s)	409
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	223, 387
TaqI	TCGA	2 cut(s)	58, 75
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	42, 389
Tru9I	TTAA	2 cut(s)	42, 389
TscAI	CASTG	2 cut(s)	210, 228
TseI	GCWGC	2 cut(s)	105, 275
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	210, 228
VneI	GTGCAC	1 cut(s)	358
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.