Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0030552

Physical Location & Seq

Genomic Coordinates Forward (+)

23735635 .. 23738230

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAAAACCCGTGCTGCCTCGATTCCTAAGAGGGCAATATATGATGCAAAGCGCTTGATTGGTAGGAGTTTCAGTGATGCCTCCATAAAGAGTGACATGAAGTTTTGGCCTTTCAAAGTTCGTGGAGTTGGAGACAAACCAATGATTGTGATTTACTACAAGAATGAAGAGAAAAAGTTTTCTGCTGAGGAGGCTACAAAAGATGCTGGTATAATTGCAGGTATGAATGTCATGCGCATCATCAATGAGCCTACCGCTACTGCTATTGCCTATGGTCTTGACAAAAAAGGTAGCACTGTTGGTGGAAAGAACGTTCTTATTTTTGATCTTGGTGGTGGCACTTTCGATGTTTCCCTTCTCAAAATTGAAGAGGGAATTTTCGAGGTACAAGCTACTGCTGAAGATTCCCATCTTGGAGGTGAAGATTTTGACAACCGAATGAGAACAAAGAGAACTCTTTCTTCCACCGATGAAACTACCGTCGAGATTGATTCTTTATATGAGAGCGTTGATTTTTACACCACAATAACCAGAGCAAAATTTGAGGAGCTCAACATAGATCTTTTTACAAAATGCATGGAGCCGGTGGAGAAGTGTTTGAGAGATGCTAAAATCGACAAGAGTATTATTCATGATGTACTTGTTGGTGGATATACTAGAAATCCTAAGGTACATCAATTATTGAGGAACTTTTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGATGAAGCAGTTGCATATGGTGCAGCCGTACAAGCTGCAATTTTGGGCAGCGAGGGAAATATTGAGAAGGTTAAGACTTACTCCTGTCGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009941 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0016363 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0034399 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0080167 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

275

Amino Acids

30.47

Weight (kDa)

6.85

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 64	8.3e-08	Hsp70 protein
HSP70	PF00012	64 - 147	1.7e-38	Hsp70 protein
HSP70	PF00012	148 - 265	6e-35	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0030552)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001968 RLG00000003718

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	312
AcsI	RAATTY	2 cut(s)	375, 539
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	4 cut(s)	387, 639, 672, 759
AfeI	AGCGCT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	115, 368
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	392, 550, 709, 764
AluI	AGCT	4 cut(s)	392, 550, 709, 764
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	53
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	4 cut(s)	14, 752, 764, 777
ApoI	RAATTY	2 cut(s)	375, 539
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	2 cut(s)	54, 237
AsuHPI	GGTGA	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	552
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	751, 764, 789
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	657
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	209
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	4 cut(s)	15, 753, 765, 778
BlsI	GCNGC	4 cut(s)	16, 754, 766, 779
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	6 cut(s)	34, 67, 193, 246, 595, 729
Bpu10I	CCTNAGC	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bse118I	RCCGGY	1 cut(s)	583
Bse21I	CCTNAGG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	408
BseGI	GGATG	1 cut(s)	825
BseJI	GATNNNNATC	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	203, 560
BseXI	GCAGC	3 cut(s)	751, 764, 789
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	325, 559
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	583
BssMI	GATC	2 cut(s)	325, 559
Bst4CI	ACNGT	2 cut(s)	298, 481
Bst6I	CTCTTC	2 cut(s)	162, 363
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstDEI	CTNAG	3 cut(s)	27, 186, 666
BstF5I	GGATG	1 cut(s)	825
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 237
BstKTI	GATC	2 cut(s)	328, 562
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	325, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 749, 761
BstV1I	GCAGC	3 cut(s)	751, 764, 789
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	825
BtsIMutI	CAGTG	2 cut(s)	79, 294
BveI	ACCTGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	2 cut(s)	54, 237
Cfr10I	RCCGGY	1 cut(s)	583
Csp6I	GTAC	4 cut(s)	386, 638, 671, 758
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	4 cut(s)	97, 232, 577, 632
CviJI	RGCY	9 cut(s)	109, 194, 250, 392, 550, 583, 709, 755, 764
CviKI_1	RGCY	9 cut(s)	109, 194, 250, 392, 550, 583, 709, 755, 764
CviQI	GTAC	4 cut(s)	386, 638, 671, 758
DdeI	CTNAG	3 cut(s)	27, 186, 666
DpnI	GATC	2 cut(s)	327, 561
DpnII	GATC	2 cut(s)	325, 559
Eam1104I	CTCTTC	2 cut(s)	162, 363
EarI	CTCTTC	2 cut(s)	162, 363
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco47III	AGCGCT	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	666
EcoICRI	GAGCTC	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	4 cut(s)	100, 235, 580, 635
FatI	CATG	4 cut(s)	96, 231, 576, 631
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	15, 753, 765, 778
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	4 cut(s)	15, 753, 765, 778
FspAI	RTGCGCAY	1 cut(s)	236
FspBI	CTAG	1 cut(s)	657
FspI	TGCGCA	1 cut(s)	236
GlaI	GCGC	2 cut(s)	53, 236
GluI	GCNGC	4 cut(s)	15, 753, 765, 778
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	584
HhaI	GCGC	2 cut(s)	54, 237
Hin1II	CATG	4 cut(s)	100, 235, 580, 635
Hin6I	GCGC	2 cut(s)	52, 235
HinP1I	GCGC	2 cut(s)	52, 235
HinfI	GANTC	3 cut(s)	22, 404, 491
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	819
Hpy188III	TCNNGA	4 cut(s)	278, 484, 632, 728
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	365, 790
HpyCH4III	ACNGT	2 cut(s)	298, 481
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	7 cut(s)	47, 218, 576, 714, 743, 752, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 749, 761
HpyF3I	CTNAG	3 cut(s)	27, 186, 666
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	100, 235, 580, 635
HspAI	GCGC	2 cut(s)	52, 235
Kzo9I	GATC	2 cut(s)	325, 559
LmnI	GCTCC	3 cut(s)	547, 580, 706
LpnPI	CCDG	5 cut(s)	192, 204, 544, 597, 741
Lsp1109I	GCAGC	3 cut(s)	751, 764, 789
LweI	GCATC	6 cut(s)	34, 67, 193, 246, 595, 729
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	327, 561
MboI	GATC	2 cut(s)	325, 559
MboII	GAAGA	5 cut(s)	179, 380, 413, 434, 453
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	6 cut(s)	213, 363, 375, 539, 677, 768
MmeI	TCCRAC	2 cut(s)	109, 797
Mph1103I	ATGCAT	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	2 cut(s)	696, 801
MspI	CCGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	191, 749, 761
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	325, 559
NlaIII	CATG	4 cut(s)	100, 235, 580, 635
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	578
PagI	TCATGA	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	22, 404, 491
PkrI	GCNGC	4 cut(s)	16, 754, 766, 779
Psp124BI	GAGCTC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	4 cut(s)	387, 639, 672, 759
RsaNI	GTAC	4 cut(s)	386, 638, 671, 758
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	696, 801
SatI	GCNGC	4 cut(s)	15, 753, 765, 778
Sau3AI	GATC	2 cut(s)	325, 559
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	6 cut(s)	34, 67, 193, 246, 595, 729
Sse9I	AATT	6 cut(s)	213, 363, 375, 539, 677, 768
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	1 cut(s)	657
SstI	GAGCTC	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	298, 481
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	5 cut(s)	20, 345, 381, 483, 615
TasI	AATT	6 cut(s)	213, 363, 375, 539, 677, 768
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	3 cut(s)	22, 404, 491
Tru1I	TTAA	2 cut(s)	696, 801
Tru9I	TTAA	2 cut(s)	696, 801
TscAI	CASTG	2 cut(s)	79, 301
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	4 cut(s)	14, 752, 764, 777
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	7 cut(s)	17, 113, 180, 239, 486, 620, 747
TspRI	CASTG	2 cut(s)	79, 301
XapI	RAATTY	2 cut(s)	375, 539
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.