Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0030463

Physical Location & Seq

Genomic Coordinates Forward (+)

41335324 .. 41337024

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCAAGGAAATAATGGAGACTCATGACAGTGTTTGCTATAGCCATCCCGAATTTACAGCTGCAAATATATTATTCTATGGATGCAAAGATGTTGTGTTATCTACTTATGGAGAGTACTGGAGACGAGTTCGGAAACTATACATTGTTGAACTTCTAAGCCTTAAAAGAGTGCAACAACTTCAGTTTGCAAGGGAGAAAGAAGTTGCAGAAATAGGCAATAGGATACGCAAAGCCTGCCTCGGTAACTCTTCGATTAATCAAAGTGACATGCTGATCACAACCTCCAACAACATACTGTCTAGGACAGTTGCAGAATATGATTGGTTTGACGCCAATCTGTTGAGCAATATCAAGGCCTCCCGTATCAGCAAGGTCATGCATAACAACACTCACAATATAAGCAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00460 ko00590 ko00591 ko00830 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00460 map00590 map00591 map00830 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

138

Amino Acids

15.8

Weight (kDa)

8.81

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030463)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0212411
rosa_laevigata	RLG00000002891

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	14, 118
AoxI	GGCC	2 cut(s)	3, 357
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	219
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	14, 118
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmcAI	AGTACT	1 cut(s)	119
BmsI	GCATC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	6, 241
Bse1I	ACTGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	6, 241
BseGI	GGATG	2 cut(s)	46, 89
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 359
BsmAI	GTCTC	2 cut(s)	14, 118
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	5, 359
Bsp143I	GATC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	5, 359
BspHI	TCATGA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	6, 241
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	32, 300, 310
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	46, 89
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	14, 118
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	5, 359
BtsCI	GGATG	2 cut(s)	46, 89
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	1 cut(s)	25
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	26, 271, 379
CviJI	RGCY	6 cut(s)	5, 45, 62, 162, 236, 359
CviKI_1	RGCY	6 cut(s)	5, 45, 62, 162, 236, 359
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	29, 274, 382
FatI	CATG	3 cut(s)	25, 270, 378
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	33, 96
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	5, 359
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	29, 274, 382
HinfI	GANTC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	26, 50
HpyCH4III	ACNGT	3 cut(s)	32, 300, 310
HpyCH4V	TGCA	7 cut(s)	65, 87, 175, 191, 209, 314, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	29, 274, 382
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	2 cut(s)	106, 250
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	245, 266
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	53, 409
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	3 cut(s)	251, 295, 370
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	165, 258, 412
MslI	CAYNNNNRTG	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	29, 274, 382
NmuCI	GTSAC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	274
PagI	TCATGA	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	165, 258, 412
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	276
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	1 cut(s)	16
SetI	ASST	3 cut(s)	64, 287, 378
SfaNI	GCATC	1 cut(s)	74
SfcI	CTRYAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	53, 409
SseBI	AGGCCT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	32, 300, 310
TaqI	TCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	53, 409
TatI	WGTACW	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	165, 258, 412
Tru9I	TTAA	3 cut(s)	165, 258, 412
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.