Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0030659

Physical Location & Seq

Genomic Coordinates Forward (+)

3804654 .. 3805950

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTGCAGGGTGAACCTGAGTGGACGAATTTACCTAGGTTAATTGGACCTGGATTTTTTGTGGCTCCTGACTTTCCATGCCTCCTTCCTTCCTTCTCCGTAATCCCACTTCCTTATTCCTTCACTCTGGTGAGTTACGATCTTCCGAAGGCGGTTCCGATTAACGTCAACAAAATCCCAGTGGCTGCTGTCGTTGGACAAGTGTCTATTCCGGATAAGTTGTCGTTGCCGGTGGTCCAGCCGGTTCTAGCGCTGGGTTCGCTGATGAAAAAGTTTTCGAAAGAGCTCAAGGCTTCCCAGTTGACGATGTCTCCGACTTCGGTGATCGCTTTCCATCAGAGAAACAAGGACGACATGACTAAGGAGTTGGAAGGGTCGGAATCGGCGACTGTTTTGCCGACGTCGGTGATTGGATTCGAGGAGAGAGCTGAGGATAGGGGGCTGGGTGTGCCTTGTCCAGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

156

Amino Acids

16.78

Weight (kDa)

5.15

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030659)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006040
rosa_multiflora	Rmu_sc0004700.1_g000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	401
AfeI	AGCGCT	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	286, 428
AluI	AGCT	2 cut(s)	286, 428
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	28
AspA2I	CCTAGG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	47, 235
AsuHPI	GGTGA	4 cut(s)	23, 142, 334, 418
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	47, 235
AvrII	CCTAGG	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	36, 248
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	1 cut(s)	186
BlnI	CCTAGG	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	47, 235
BmgT120I	GGNCC	2 cut(s)	47, 235
BmiI	GGNNCC	2 cut(s)	66, 156
BmrFI	CCNGG	1 cut(s)	51
BmrI	ACTGGG	2 cut(s)	173, 292
BmuI	ACTGGG	2 cut(s)	173, 292
BoxI	GACNNNNGTC	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bse118I	RCCGGY	2 cut(s)	229, 241
Bse1I	ACTGG	2 cut(s)	179, 298
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	9, 420
BseNI	ACTGG	2 cut(s)	179, 298
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	2 cut(s)	253, 442
BsgI	GTGCAG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	212, 230, 242
BsmAI	GTCTC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	139, 324
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	10, 421
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	66, 156
BspT104I	TTCGAA	1 cut(s)	278
BsrFI	RCCGGY	2 cut(s)	229, 241
BsrI	ACTGG	2 cut(s)	179, 298
BssAI	RCCGGY	2 cut(s)	229, 241
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	139, 324
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	18, 360, 429
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	142, 327
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	139, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 448
BstNI	CCWGG	1 cut(s)	51
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	2 cut(s)	229, 241
Cfr13I	GGNCC	2 cut(s)	47, 235
CviAII	CATG	2 cut(s)	78, 355
CviJI	RGCY	7 cut(s)	65, 185, 241, 286, 293, 428, 442
CviKI_1	RGCY	7 cut(s)	65, 185, 241, 286, 293, 428, 442
DdeI	CTNAG	3 cut(s)	18, 360, 429
DpnI	GATC	2 cut(s)	141, 326
DpnII	GATC	2 cut(s)	139, 324
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	47, 235
Eco47III	AGCGCT	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	81, 358
FaiI	YATR	2 cut(s)	79, 356
FatI	CATG	2 cut(s)	77, 354
Fnu4HI	GCNGC	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	36, 248
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	2 cut(s)	257, 446
HaeII	RGCGCY	1 cut(s)	254
HapII	CCGG	3 cut(s)	212, 230, 242
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	81, 358
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	2 cut(s)	169, 303
HindII	GTYRAC	2 cut(s)	169, 303
HinfI	GANTC	2 cut(s)	380, 414
HpaII	CCGG	3 cut(s)	212, 230, 242
HphI	GGTGA	4 cut(s)	23, 142, 334, 418
Hpy166II	GTNNAC	4 cut(s)	14, 24, 169, 303
Hpy188I	TCNGA	5 cut(s)	147, 159, 315, 339, 379
Hpy188III	TCNNGA	3 cut(s)	68, 212, 458
Hpy8I	GTNNAC	4 cut(s)	14, 24, 169, 303
Hpy99I	CGWCG	2 cut(s)	403, 406
HpyAV	CCTTC	6 cut(s)	95, 99, 103, 130, 142, 365
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	165, 401
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 448
HpyF3I	CTNAG	3 cut(s)	18, 360, 429
HpySE526I	ACGT	2 cut(s)	165, 401
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	81, 358
HspAI	GCGC	1 cut(s)	251
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	139, 324
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	36, 248
MaeII	ACGT	2 cut(s)	165, 401
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	141, 326
MboI	GATC	2 cut(s)	139, 324
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	28, 42, 463
MmeI	TCCRAC	4 cut(s)	175, 338, 348, 357
MnlI	CCTC	3 cut(s)	92, 412, 424
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	2 cut(s)	41, 162
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	3 cut(s)	212, 230, 242
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	259, 448
NdeII	GATC	2 cut(s)	139, 324
NlaIII	CATG	2 cut(s)	81, 358
NlaIV	GGNNCC	2 cut(s)	66, 156
NspV	TTCGAA	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 383
PfeI	GAWTC	2 cut(s)	380, 414
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	187
PshAI	GACNNNNGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	49
PspFI	CCCAGC	2 cut(s)	253, 442
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	66, 156
PspPI	GGNCC	2 cut(s)	47, 235
PstNI	CAGNNNCTG	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	41, 162
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	139, 324
Sau96I	GGNCC	2 cut(s)	47, 235
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	19, 37, 41, 52, 168, 288, 404, 430
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	2 cut(s)	47, 235
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	28, 42, 463
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	2 cut(s)	36, 248
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	168, 404
TaqI	TCGA	2 cut(s)	278, 417
TasI	AATT	3 cut(s)	28, 42, 463
TfiI	GAWTC	2 cut(s)	380, 414
Tru1I	TTAA	2 cut(s)	41, 162
Tru9I	TTAA	2 cut(s)	41, 162
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	186
Tth111I	GACNNNGTC	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	47, 235
XapI	RAATTY	1 cut(s)	28
XmaJI	CCTAGG	1 cut(s)	35
XspI	CTAG	2 cut(s)	36, 248
ZraI	GACGTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.