RLG00000012720

Protein of unknown function (DUF627)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0030695
Physical Location & Seq
Reverse (-)
21623140 .. 21623694
555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012720

Sequence Viewer

Length: 309 bp
ATGCGGAATAAGAAGCGAAACGCTGCTTCGCGTGCCAAACAGTCGCTGGCGGGGGTTGCGCCGATTGTGGATGGCGGAGACGCCATCGTTTTGGCCCAGCCCGATTCTGCTCCCCTCAATCTCGCCGACGCCGAGTCCAATAGCCCTAACAATAACAACCACAACAACAAGATCAAATCCTCGCCGTCTATCGAATCAGGCGGTGGTGCACTATTTGATTCGAAGGCTTACGTCGCAGCGAAGCTCGAATGCTACAATACTAGGAATTGCTCTAAGATCGTACTTGGAGTTGTCATCGATCGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF627 DUF629 UCH

Protein Analysis

103

Amino Acids

10.71

Weight (kDa)

9.47

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030695)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012720
rosa_multiflora Rmu_sc0006223.1_g000038

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 31
AciI CCGC 4 cut(s) 4, 50, 75, 201
AcyI GRCGYC 2 cut(s) 81, 129
AfaI GTAC 1 cut(s) 282
AhdI GACNNNNNGTC 1 cut(s) 133
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 72
Alw44I GTGCAC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 23, 236
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 10, 248
BccI CCATC 2 cut(s) 65, 92
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 24, 237
BlsI GCNGC 2 cut(s) 25, 238
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 94
Bpu14I TTCGAA 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 81, 129
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 2 cut(s) 10, 248
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 171, 276, 298
BspACI CCGC 4 cut(s) 4, 50, 75, 201
BspANI GGCC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 221
BssMI GATC 3 cut(s) 171, 276, 298
BssNI GRCGYC 2 cut(s) 81, 129
Bst4CI ACNGT 1 cut(s) 42
BstACI GRCGYC 2 cut(s) 81, 129
BstBI TTCGAA 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 33, 48
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 174, 279, 301
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 3 cut(s) 171, 276, 298
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 32, 56, 233
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 10, 248
BstXI CCANNNNNNTGG 1 cut(s) 91
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 33, 48
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 2 cut(s) 89, 137
Csp6I GTAC 1 cut(s) 281
CviJI RGCY 5 cut(s) 95, 100, 144, 227, 244
CviKI_1 RGCY 5 cut(s) 95, 100, 144, 227, 244
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 173, 278, 300
DpnII GATC 3 cut(s) 171, 276, 298
DriI GACNNNNNGTC 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 72
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 24, 237
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 24, 237
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 24, 237
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 2 cut(s) 89, 137
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 2 cut(s) 81, 129
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 4 cut(s) 104, 134, 194, 218
Hpy166II GTNNAC 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 209
Hpy99I CGWCG 2 cut(s) 131, 236
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 56, 233
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 81, 129
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 3 cut(s) 171, 276, 298
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 32, 110, 183
Lsp1109I GCAGC 2 cut(s) 10, 248
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 231
MalI GATC 3 cut(s) 173, 278, 300
MboI GATC 3 cut(s) 171, 276, 298
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 265
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 2 cut(s) 125, 190
Mva1269I GAATGC 1 cut(s) 254
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 32, 56, 233
NdeII GATC 3 cut(s) 171, 276, 298
NmeAIII GCCGAG 1 cut(s) 157
NspV TTCGAA 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 104, 194, 218
PkrI GCNGC 2 cut(s) 25, 238
Ple19I CGATCG 1 cut(s) 301
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 46
PvuI CGATCG 1 cut(s) 301
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SatI GCNGC 2 cut(s) 24, 237
Sau3AI GATC 3 cut(s) 171, 276, 298
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 211
SetI ASST 2 cut(s) 234, 246
SfuI TTCGAA 1 cut(s) 221
Sse9I AATT 1 cut(s) 265
SsiI CCGC 4 cut(s) 4, 50, 75, 201
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 234
TaqI TCGA 4 cut(s) 192, 221, 246, 297
TasI AATT 1 cut(s) 265
TfiI GAWTC 3 cut(s) 104, 194, 218
TseI GCWGC 2 cut(s) 23, 236
VneI GTGCAC 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.