RLG00000013050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0030728
Physical Location & Seq
Forward (+)
25358767 .. 25359207
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013050

Sequence Viewer

Length: 441 bp
ATGTGGATCCCAACAATCCAGCTATGGACTCTTGCGACGGCCCTCGCAAGCCGGACTATCATTGAAGTTCTCATAAGGGTACCTCGCCGTCACCATCCCAACCTCAAACACCAAATTCTCGCCGCTGGACCTGATTCCGATGATCGACCGCCACTGGCAGAAGGCCTGGACGTTGATGCCGTTGATTTCGGCGATCCGGCCTTGGTTGATTTTGCCGGTGACTTTCTTGGAATATGTGGCCAAGTAGTTGTCCGGCGGGAGCGTGATCTTGCACGCGTCGCCAAGGTCGATGACGAAGTCGGCGATAAGGGGGTTGACGGAGTAGTTTTTGACCGGAGAAGGAAGGAGCCCGATTGGGAAGCAGTAGCGGGTCAGCTCGGTGTGGGCCAGCGATGGGGTTCGGGTTGGCGGTTTGGGATGAGAGAGAAACGAGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.17

Weight (kDa)

5.91

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030728)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013050
rosa_multiflora Rmu_sc0001432.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 1 cut(s) 276
AciI CCGC 5 cut(s) 123, 149, 256, 368, 409
AclWI GGATC 2 cut(s) 14, 188
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 394
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 22, 376
AluI AGCT 2 cut(s) 22, 376
AlwI GGATC 2 cut(s) 14, 188
AoxI GGCC 5 cut(s) 39, 163, 198, 238, 385
ApoI RAATTY 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 79
AspS9I GGNCC 3 cut(s) 40, 128, 385
AsuHPI GGTGA 2 cut(s) 83, 230
AvaII GGWCC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 240
BamHI GGATCC 1 cut(s) 6
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 351
BccI CCATC 2 cut(s) 102, 387
BceAI ACGGC 3 cut(s) 54, 72, 164
BciT130I CCWGG 1 cut(s) 167
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 40, 128, 385
BmiI GGNNCC 3 cut(s) 8, 81, 348
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 201, 282
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 201, 282
BseGI GGATG 2 cut(s) 94, 423
BseLI CCNNNNNNNGG 1 cut(s) 394
BseNI ACTGG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 41, 165, 200, 240, 387
BshNI GGYRCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 149
BsiSI CCGG 5 cut(s) 52, 197, 216, 253, 334
BslI CCNNNNNNNGG 1 cut(s) 394
BsnI GGCC 5 cut(s) 41, 165, 200, 240, 387
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 4 cut(s) 6, 142, 193, 265
BspACI CCGC 5 cut(s) 123, 149, 256, 368, 409
BspANI GGCC 5 cut(s) 41, 165, 200, 240, 387
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 8, 81, 348
BspPI GGATC 2 cut(s) 14, 188
BspT107I GGYRCC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 201, 282
BssMI GATC 4 cut(s) 6, 142, 193, 265
BssT1I CCWWGG 2 cut(s) 201, 282
Bst2UI CCWGG 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 49, 274, 389
BstF5I GGATG 2 cut(s) 94, 423
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 4 cut(s) 9, 145, 196, 268
BstMBI GATC 4 cut(s) 6, 142, 193, 265
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 5 cut(s) 41, 165, 200, 240, 387
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 94, 423
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 3 cut(s) 49, 274, 389
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 40, 128, 385
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 9 cut(s) 22, 41, 51, 165, 200, 240, 349, 376, 387
CviKI_1 RGCY 9 cut(s) 22, 41, 51, 165, 200, 240, 349, 376, 387
CviQI GTAC 1 cut(s) 80
DpnI GATC 4 cut(s) 8, 144, 195, 267
DpnII GATC 4 cut(s) 6, 142, 193, 265
EaeI YGGCCR 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 201, 282
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 201, 282
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 201, 282
FaiI YATR 3 cut(s) 25, 74, 235
FauI CCCGC 2 cut(s) 249, 361
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 81, 430
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 5 cut(s) 41, 165, 200, 240, 387
HapII CCGG 5 cut(s) 52, 197, 216, 253, 334
HgaI GACGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 2 cut(s) 28, 134
HpaII CCGG 5 cut(s) 52, 197, 216, 253, 334
HphI GGTGA 2 cut(s) 83, 230
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 2 cut(s) 40, 281
HpyAV CCTTC 3 cut(s) 155, 333, 337
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 171
KpnI GGTACC 1 cut(s) 83
Kzo9I GATC 4 cut(s) 6, 142, 193, 265
LmnI GCTCC 2 cut(s) 259, 346
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 89, 218
MalI GATC 4 cut(s) 8, 144, 195, 267
MboI GATC 4 cut(s) 6, 142, 193, 265
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 114
MluI ACGCGT 1 cut(s) 274
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 5 cut(s) 53, 93, 113, 425, 428
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 5 cut(s) 52, 197, 216, 253, 334
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 4 cut(s) 6, 142, 193, 265
NlaIV GGNNCC 3 cut(s) 8, 81, 348
NmuCI GTSAC 2 cut(s) 89, 218
PceI AGGCCT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 285, 300
PfeI GAWTC 1 cut(s) 134
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 8, 81, 348
PspPI GGNCC 3 cut(s) 40, 128, 385
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 4 cut(s) 6, 142, 193, 265
Sau96I GGNCC 3 cut(s) 40, 128, 385
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 351
SetI ASST 7 cut(s) 24, 85, 105, 133, 174, 288, 378
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 1 cut(s) 128
Sse9I AATT 1 cut(s) 114
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 5 cut(s) 123, 149, 256, 368, 409
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 201, 282
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 145, 288
TasI AATT 1 cut(s) 114
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 89, 218
Tsp45I GTSAC 2 cut(s) 89, 218
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.