RLG00000013208
BHLH Family

Transcription factor ABORTED

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
27684396 .. 28020354
335959 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013208

Sequence Viewer

Length: 315 bp
ATGGACAAGGCTTCGATTCTCAAGGATGCGATTGATTTTGTCAAGGACTTGCAGAGACAAGTGAAAGAACTCCAAGATGTGCTTGAACATAATTCAAATGAAGAAGGAGGAGCTAAGAGAACTTTTAATAGTATCTCTGGAAATCACAACAATTACCAGTCAGAAGGTCTGAATCAACATGGAATTTCCATGGCAAACAAACCAAAAAGTGACAACCCTCAAAACGGCTTTCGTGACTCGGATCGATCACGCATTCATGTTCCGTCATCAAGTAATAGCTCGGTACGTCGTCCTGTACACAATTATATTCCGTGA

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

8.1

Isoelectric Point (pI)

64.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0030697)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013207 RLG00000013208

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 183
AfaI GTAC 2 cut(s) 285, 297
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 86, 96
AluBI AGCT 2 cut(s) 113, 279
AluI AGCT 2 cut(s) 113, 279
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 183
BceAI ACGGC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 49
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 252
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 2 cut(s) 241, 245
Bsp19I CCATGG 1 cut(s) 189
BspDI ATCGAT 1 cut(s) 244
BspPI GGATC 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 241, 245
BssT1I CCWWGG 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 2 cut(s) 244, 248
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 241, 245
Bsu15I ATCGAT 1 cut(s) 244
BsuTUI ATCGAT 1 cut(s) 244
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 244
Csp6I GTAC 2 cut(s) 284, 296
CviAII CATG 3 cut(s) 179, 190, 257
CviJI RGCY 4 cut(s) 11, 113, 228, 279
CviKI_1 RGCY 4 cut(s) 11, 113, 228, 279
CviQI GTAC 2 cut(s) 284, 296
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 243, 247
DpnII GATC 2 cut(s) 241, 245
Eco130I CCWWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 3 cut(s) 182, 193, 260
FaiI YATR 5 cut(s) 90, 180, 191, 258, 306
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 3 cut(s) 178, 189, 256
FokI GGATG 1 cut(s) 38
Hin1II CATG 3 cut(s) 182, 193, 260
HinfI GANTC 3 cut(s) 16, 172, 236
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 163, 171, 241
Hpy188III TCNNGA 2 cut(s) 138, 233
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 98, 158
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 3 cut(s) 182, 193, 260
Kzo9I GATC 2 cut(s) 241, 245
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 123, 170, 306
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 209, 233
MalI GATC 2 cut(s) 243, 247
MboI GATC 2 cut(s) 241, 245
MboII GAAGA 1 cut(s) 113
MluCI AATT 4 cut(s) 91, 151, 183, 301
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 101, 228
MseI TTAA 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 252
NcoI CCATGG 1 cut(s) 189
NdeII GATC 2 cut(s) 241, 245
NlaIII CATG 3 cut(s) 182, 193, 260
NmuCI GTSAC 2 cut(s) 209, 233
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 16, 172
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 285, 297
RsaNI GTAC 2 cut(s) 284, 296
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 2 cut(s) 241, 245
SchI GAGTC 1 cut(s) 230
SetI ASST 4 cut(s) 115, 169, 281, 289
SfaNI GCATC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 4 cut(s) 91, 151, 183, 301
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 14, 244
TasI AATT 4 cut(s) 91, 151, 183, 301
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 2 cut(s) 16, 172
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 2 cut(s) 209, 233
Tsp45I GTSAC 2 cut(s) 209, 233
TspDTI ATGAA 2 cut(s) 114, 245
TspGWI ACGGA 2 cut(s) 252, 300
XapI RAATTY 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.